View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3696_low_23 (Length: 259)

Name: NF3696_low_23
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3696_low_23
NF3696_low_23
[»] scaffold0105 (1 HSPs)
scaffold0105 (3-241)||(18553-18795)
[»] chr4 (2 HSPs)
chr4 (3-241)||(8191978-8192220)
chr4 (101-217)||(54420991-54421107)
[»] chr3 (5 HSPs)
chr3 (27-203)||(4179204-4179380)
chr3 (33-203)||(4172877-4173047)
chr3 (27-186)||(46589810-46589970)
chr3 (27-217)||(30694595-30694784)
chr3 (34-205)||(45731435-45731606)
[»] chr2 (4 HSPs)
chr2 (33-185)||(35917774-35917925)
chr2 (73-209)||(9795526-9795661)
chr2 (65-139)||(18557299-18557374)
chr2 (27-72)||(18557401-18557446)
[»] chr7 (3 HSPs)
chr7 (27-217)||(48260707-48260897)
chr7 (33-186)||(42694677-42694830)
chr7 (101-195)||(37381511-37381605)
[»] scaffold0740 (1 HSPs)
scaffold0740 (34-195)||(2676-2837)
[»] chr8 (4 HSPs)
chr8 (27-215)||(14139396-14139584)
chr8 (27-185)||(40147376-40147533)
chr8 (27-137)||(12619874-12619985)
chr8 (27-98)||(11325527-11325598)
[»] chr6 (2 HSPs)
chr6 (34-190)||(19403290-19403445)
chr6 (55-217)||(15107684-15107846)
[»] scaffold1619 (1 HSPs)
scaffold1619 (27-209)||(610-791)
[»] chr1 (2 HSPs)
chr1 (34-217)||(27024224-27024407)
chr1 (27-75)||(7713806-7713854)
[»] scaffold0057 (1 HSPs)
scaffold0057 (27-182)||(60652-60799)
[»] chr5 (1 HSPs)
chr5 (101-186)||(11140973-11141058)


Alignment Details
Target: scaffold0105 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 18553 - 18795
Alignment:
Q  3 aaagtcattattttgccaaaacagtttttacaaataaaaagtaagaataaataacttcaagtaatat----aatataggagaaacaaagaggccgacaaa 98  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  18553 aaagtcattactttgccaaaatagtttttgcaaataaaaagtaagaataaataacttcaagtaatatatataatataggagaaacaaagaggccgacaaa 18652  T
Q  99 attacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaag 198  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  18653 attacaataaaaagtaaagtttctaatgataatattatcatctggatcagttaaattatcaacaattttaaagatgcaactttaatatcgtaacacgaag 18752  T
Q  199 taagcgtacacataaaaaattgatcctaactgcaatggctgct 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  18753 taagcgtacacataaaaaattgatcctaactgcaagggctgct 18795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 8191978 - 8192220
Alignment:
Q  3 aaagtcattattttgccaaaacagtttttacaaataaaaagtaagaataaataacttcaagtaatat----aatataggagaaacaaagaggccgacaaa 98  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  8191978 aaagtcattactttgccaaaatagtttttgcaaataaaaagtaagaataaataacttcaagtaatatatataatataggagaaacaaagaggccgacaaa 8192077  T
Q  99 attacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaag 198  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||    
T  8192078 attacaataaaaagtaaagtttctaatgataatattatcatctggatcagttaaattatcaacaattttaaagatgcaactttaatatcgtaacacgaag 8192177  T
Q  199 taagcgtacacataaaaaattgatcctaactgcaatggctgct 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  8192178 taagcgtacacataaaaaattgatcctaactgcaagggctgct 8192220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 54421107 - 54420991
Alignment:
Q  101 tacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagta 200  Q
    ||||| ||||||| ||||||||||||| ||||||||||| || ||||||| |||| || ||||||||||||||||||||||||||| ||| |||| |||     
T  54421107 tacaggaaaaagtgaagtttctaatgaaaaaattatcatctgaatcagtcgaattgtctacaattttaaagatgcaactttaatatcgtaacacgtagtt 54421008  T
Q  201 agcgtacacataaaaaa 217  Q
    | |||||||| ||||||    
T  54421007 aacgtacacaaaaaaaa 54420991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 4179380 - 4179204
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| |||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||  |||||||| || ||||||| ||||||||||||    
T  4179380 tttttgcaaataaaaagttagaatatacaacttcaagtaatataatattggagaaacaaagaggccagcaaaattaaaggaaaaagtgaagtttctaatg 4179281  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagc 203  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||  ||| |||||||    
T  4179280 ataaaattatcatctggatcagtcaaattatctacaattttaaagatacaactttaatatcgtaaaacgtagtaagc 4179204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 4173047 - 4172877
Alignment:
Q  33 caaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaa 132  Q
    ||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||    
T  4173047 caaataacaagtcagaataaacaacttcaagtaatataatatatgagaaacaaagaggccggcaaaattaaaggaaaaagtgaagtttctaatgataaaa 4172948  T
Q  133 ttatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagc 203  Q
    ||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |||  ||| |||||||    
T  4172947 ttatcatctgaatcagtcaaattatctacaattttaaagatacaactttaatatcgtaaaacgtagtaagc 4172877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 46589810 - 46589970
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaa-gtaaagtttctaat 125  Q
    ||||| |||||||||||| |||||||| |  |||||||||||||||||| |||||||||||||||||||||| |||||| ||||| || |||||||||||    
T  46589810 tttttgcaaataaaaagtcagaataaacagtttcaagtaatataatataagagaaacaaagaggccgacaaatttacagaaaaaaagtgaagtttctaat 46589909  T
Q  126 gataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatat 186  Q
     ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||    
T  46589910 aataaaattatcatctagatcagtcaaattatctacaattttaaagatgcaactttaatat 46589970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 30694595 - 30694784
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| |||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||||  ||||   ||||||||||||    
T  30694595 tttttgcaaataaaaagtcagaataaacaacttcaagta-tataatataagagaaacaaagaggtcgacaaaattacagagaaaaacgaagtttctaatg 30694693  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgtacacataaaaaa 217  Q
    ||||||||||||| | ||||| ||||||||||  |||||||||||||||||||||||||| |||  ||| ||||| |||||||| ||||||    
T  30694694 ataaaattatcatctagatcaatcaaattatctccaattttaaagatgcaactttaatatcgtaaaacgtagtaaacgtacacaaaaaaaa 30694784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 45731435 - 45731606
Alignment:
Q  34 aaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaat 133  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||     | |||||||||  || |||| ||||||||||| || ||||    
T  45731435 aaataaaaagtcagaataaataacttcaaataatataatataggagaaacaaagaacttaaaaaaattacacgaacaagtgaagtttctaataattaaat 45731534  T
Q  134 tatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgt 205  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||  ||| |||||||||    
T  45731535 tatcatttgaattagtcaaattatcaacaattttaaagatgcaactttaatatcgtaatacgtagtaagcgt 45731606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 35917774 - 35917925
Alignment:
Q  33 caaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaa 132  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  35917774 caaataaaaaatcagaataaataacttcaagtaatataatatatgagaaacaaagaggccgacaaa-ttacactaaaaagtaaagtttctaatgataaaa 35917872  T
Q  133 ttatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaata 185  Q
    |||||||||| |||| | |||||||||| ||||||||| ||||||||||||||    
T  35917873 ttatcatttgaatcatttaaattatcaataattttaaaaatgcaactttaata 35917925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 9795661 - 9795526
Alignment:
Q  73 ataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaattatcaacaattttaaaga 172  Q
    ||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||    
T  9795661 ataggagaaacaaagaggccggcaaaattatag-aaaaagtgaagtttctaatgataaaattatcatctagattagtcaaattatctacaattttaaaga 9795563  T
Q  173 tgcaactttaatattgtatcacgaagtaagcgtacac 209  Q
    |||||||||||||| |||| ||| |||||||||||||    
T  9795562 tgcaactttaatatcgtataacgtagtaagcgtacac 9795526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 18557374 - 18557299
Alignment:
Q  65 aatataatataggagaaacaaagaggccgacaaaattacagtaaaaa-gtaaagtttctaatgataaaattatcat 139  Q
    ||||||||||||||||||||||||||| || ||||||||| |||||| |||||||||||| | ||||||| |||||    
T  18557374 aatataatataggagaaacaaagaggctgaaaaaattacactaaaaaggtaaagtttctagtaataaaatcatcat 18557299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 18557446 - 18557401
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataat 72  Q
    ||||| |||||||||| | |||||||||| ||||||||||||||||    
T  18557446 tttttgcaaataaaaaatcagaataaatagcttcaagtaatataat 18557401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 48260897 - 48260707
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||| | |||||| |||||    
T  48260897 tttttgcaaataaaaagtcagaataaacaacttcaagtagtataatataggagaaacaaagagaccggcaaaattacaggaaaaaatgaagtttttaatg 48260798  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgtacacataaaaaa 217  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||| |||  ||  |||||||||||| | ||||||    
T  48260797 ataaaattatcatccggatcagtcaaattatctacaattttaaagatacaactttaatatcgtaaaacatagtaagcgtacaaaaaaaaaa 48260707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 42694677 - 42694830
Alignment:
Q  33 caaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaa 132  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||  ||||||| |||||| ||||||||| |    
T  42694677 caaataaaaagtcaaaataaataatttcaagtaatataatataggagaaataaataggctgacaaaattacatcaaaaagtgaagtttataatgataaga 42694776  T
Q  133 ttatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatat 186  Q
    |||| || || |||||| |||||||||| |||||||||||| ||| ||||||||    
T  42694777 ttataatctgaatcagttaaattatcaataattttaaagatccaattttaatat 42694830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 37381605 - 37381511
Alignment:
Q  101 tacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacg 195  Q
    ||||| ||||||| ||||||||||||| ||||||||||| | |||||||||| ||||| |||||||||||||| |||||||||||| ||| ||||    
T  37381605 tacaggaaaaagtgaagtttctaatgaaaaaattatcatctagatcagtcaagttatctacaattttaaagatacaactttaatatcgtaacacg 37381511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 2676 - 2837
Alignment:
Q  34 aaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaat 133  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||||  |||||||||| |||||||| |||||| ||||||||||||    
T  2676 aaataaaaagtcagaataaataacttcaagtaatataacataggaaaaataaagaggcctgcaaaattacattaaaaagtgaagtttgtaatgataaaat 2775  T
Q  134 tatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacg 195  Q
    ||| |||||||||| |||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  2776 tataatttggatcaatcaaattatcaaaaattttaaagatgcaactttaatatcgtaacacg 2837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 14139584 - 14139396
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| |||||||||||  | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||    
T  14139584 tttttgcaaataaaaaggcataataaataacttcaaataatacaatataggagaaacaaagaggccgacaaaattacactaaaaagtgaagcttttaatg 14139485  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgtacacataaaa 215  Q
    |||||||||||||  | |||||| ||||| |||||||||||||||||||| ||||||||| ||| ||  ||||||||||||||| ||||    
T  14139484 ataaaattatcatacgaatcagttaaattgtcaacaattttaaagatgcatctttaatatcgtaacattaagtaagcgtacacaaaaaa 14139396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 40147376 - 40147533
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |||||| | ||||||||||||    
T  40147376 tttttgcaaataaaaagtcagaataaataacttcaa-taatataatatatgagaaacaaagaggcagacaaaattacactaaaaaatgaagtttctaatg 40147474  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaata 185  Q
    ||||||||||||  || |||| | |||||||||||||||||||| ||||||||||||||    
T  40147475 ataaaattatcacctgaatcatttaaattatcaacaattttaaaaatgcaactttaata 40147533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 12619985 - 12619874
Alignment:
Q  27 tttttacaaataaaaagtaagaataaa-taacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaat 125  Q
    ||||| |||||||||||| |||||||| |||||| |||||||||||||||| | ||||||||||||  ||||||||| | |||||||| ||||||||| |    
T  12619985 tttttgcaaataaaaagtcagaataaaataacttaaagtaatataatatagaaaaaacaaagaggcgaacaaaattatactaaaaagtgaagtttctagt 12619886  T
Q  126 gataaaattatc 137  Q
    ||||||||||||    
T  12619885 gataaaattatc 12619874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 11325598 - 11325527
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaa 98  Q
    ||||| ||||||| | || |||||| |||||||||||||||||||| ||| ||||||||||||||| |||||    
T  11325598 tttttgcaaataacatgtcagaatagataacttcaagtaatataatgtagcagaaacaaagaggccaacaaa 11325527  T

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Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 19403445 - 19403290
Alignment:
Q  34 aaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaat 133  Q
    ||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||  ||||    
T  19403445 aaataaaaagtcagaacaaa-aacttcatgtaatataatataggagaaacaaagaggccgacaaaattacaggaaaaagtgaaatttctaatgaataaat 19403347  T
Q  134 tatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgta 190  Q
    || ||| || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  19403346 taccatctgaatcagtcaaattatctacaattttaaagatgcaactttaatattgta 19403290  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 15107684 - 15107846
Alignment:
Q  55 aacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaat 154  Q
    ||||||| |||||||||||||||||||||||||||||   ||||||||| | ||||||| ||||||||||||| ||| ||||||| | ||||||||||||    
T  15107684 aacttcatgtaatataatataggagaaacaaagaggcaagcaaaattactggaaaaagtgaagtttctaatgaaaaagttatcatctagatcagtcaaat 15107783  T
Q  155 tatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgtacacataaaaaa 217  Q
    |||| ||||||||||||||||||||||| ||| ||| |||| ||| | |||||||| ||||||    
T  15107784 tatctacaattttaaagatgcaactttactatcgtaacacgtagttaacgtacacaaaaaaaa 15107846  T

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Target: scaffold1619 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 610 - 791
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| ||||||||||||||||| ||| ||||||| || |||||||||||| |||||||| |||||||||||||||||  ||||||| ||||||||||||    
T  610 tttttgcaaataaaaagtaagaacaaa-aacttcatgtgatataatataggggaaacaaataggccgacaaaattacatgaaaaagtgaagtttctaatg 708  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgtacac 209  Q
    | ||||||||||| | |||||||||||||||| |||||||| || || |||||||||||| ||| |||| ||| |||||||||    
T  709 aaaaaattatcatctcgatcagtcaaattatctacaattttgaatatacaactttaatatcgtaacacgtagttagcgtacac 791  T

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Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 27024224 - 27024407
Alignment:
Q  34 aaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatgataaaat 133  Q
    ||||||||||| |||||||| |||||||| |||| || ||||||  |||||||||||||||| |||||| || |||| || |||||||||||||||||||    
T  27024224 aaataaaaagtcagaataaacaacttcaaataatttattatagggaaaacaaagaggccgaccaaattatagaaaaaggtgaagtttctaatgataaaat 27024323  T
Q  134 tatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatattgtatcacgaagtaagcgtacacataaaaaa 217  Q
    ||||||  ||||||||||||||||| ||||||||||||||| ||||||||||| |||  ||| || |||| |||||| ||||||    
T  27024324 tatcatcaggatcagtcaaattatctacaattttaaagatgaaactttaatatcgtaaaacgtagcaagcatacacaaaaaaaa 27024407  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7713854 - 7713806
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatata 75  Q
    ||||| |||||||||||| ||| ||||||||| |||||| |||||||||    
T  7713854 tttttgcaaataaaaagtcagattaaataactgcaagtagtataatata 7713806  T

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Target: scaffold0057 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 60799 - 60652
Alignment:
Q  27 tttttacaaataaaaagtaagaataaataacttcaagtaatataatataggagaaacaaagaggccgacaaaattacagtaaaaagtaaagtttctaatg 126  Q
    ||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |       ||| ||||||||||||    
T  60799 tttttgcaaataaaaagtaagaacaaa-aacttcatgtaatataatataggagaaacaaagaggccgacaaaattcc-------agtgaagtttctaatg 60708  T
Q  127 ataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaacttta 182  Q
    | |||||||||||   ||| |||||||||||| |||||||| || |||||||||||    
T  60707 aaaaaattatcatcccgattagtcaaattatctacaattttgaatatgcaacttta 60652  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 11141058 - 11140973
Alignment:
Q  101 tacagtaaaaagtaaagtttctaatgataaaattatcatttggatcagtcaaattatcaacaattttaaagatgcaactttaatat 186  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  11141058 tacaggaaaaagtgaagtttctaatgaaaaaattatcatttggatcagtaaaattatctacaattttaaagatgcaactttaatat 11140973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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