View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_low_25 (Length: 244)
Name: NF3696_low_25
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 13161416 - 13161184
Alignment:
| Q |
12 |
atcagtaaaaaataagagccagtggaattcaagagaatcgtagcaactcatataatatagatagagtagtatataatatgaacctcaacattccaacatt |
111 |
Q |
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| T |
13161416 |
atcagtaaaaaataagagccagtggaactcaagagaatcgtagcaactcatataatatagatagagtagtatataatatgaacctcaaccttccaacatt |
13161317 |
T |
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| Q |
112 |
ttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttatacatatataaaatcactcaaatcttgaaaaccttgatttt |
211 |
Q |
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| T |
13161316 |
ttctacaaccaaaaaagaaagataaataaaatacagacaggagaaattctcttattttatacatatataaaatcactcaaatcttgaaaaccttgatttt |
13161217 |
T |
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| Q |
212 |
ttcttacatgtcactcttaagagaaatagttgc |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
13161216 |
ttcttacatgtcactcttaagagaaatagttgc |
13161184 |
T |
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