View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3696_low_4 (Length: 532)

Name: NF3696_low_4
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3696_low_4
NF3696_low_4
[»] chr4 (12 HSPs)
chr4 (249-522)||(3746195-3746467)
chr4 (18-190)||(3745964-3746136)
chr4 (18-185)||(3751781-3751948)
chr4 (51-178)||(3781187-3781314)
chr4 (24-178)||(3762772-3762926)
chr4 (51-161)||(3767203-3767313)
chr4 (51-183)||(3776874-3777006)
chr4 (18-112)||(3755648-3755742)
chr4 (439-522)||(13538252-13538336)
chr4 (430-522)||(31351661-31351754)
chr4 (441-480)||(38415494-38415533)
chr4 (441-498)||(35010382-35010439)
[»] chr8 (3 HSPs)
chr8 (431-515)||(1028751-1028836)
chr8 (443-498)||(28300139-28300194)
chr8 (431-475)||(19756417-19756461)
[»] chr1 (1 HSPs)
chr1 (431-518)||(2098777-2098864)
[»] chr7 (6 HSPs)
chr7 (440-521)||(37307687-37307769)
chr7 (439-522)||(9667228-9667312)
chr7 (439-475)||(27227261-27227297)
chr7 (435-497)||(23982068-23982130)
chr7 (440-497)||(24250144-24250201)
chr7 (439-475)||(47684484-47684520)
[»] chr3 (3 HSPs)
chr3 (440-522)||(9737574-9737657)
chr3 (430-475)||(52910376-52910421)
chr3 (439-475)||(11988928-11988964)
[»] chr2 (2 HSPs)
chr2 (430-475)||(37123631-37123676)
chr2 (439-475)||(8915639-8915675)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 249 - 522
Target Start/End: Original strand, 3746195 - 3746467
Alignment:
Q  249 tgttgggtaggcatggtggtggggttaagagtgattttgatgctaactctagagaagccaaagtagtgaaggagagaagagaataatggaagatgaatga 348  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3746195 tgttgggtaggcatggtggtggggtta-gagtgattttgatgctaactctagagaaaccaaaatagtgaaggagagaagagaataatggaagatgaatga 3746293  T
Q  349 agtgtagctaagaggggtttgtttataagacaccaaatatagagggagaaaagtgaactaaaaaggacaaaagannnnnnnatcaggtaatctagtggct 448  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||       |||| |||| |||| ||||    
T  3746294 agtgtagccaagaggggtttgtttataagacaacaagtatagagggagaaaagtgaactaaaaaggacaaaagatttttttatcaagtaacctagcggct 3746393  T
Q  449 agattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatctctg 522  Q
    ||||| | ||||||||| | ||||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  3746394 agatttacacacattatatgtggagaaatgggaaatccggggttcgaacctcacccctacacataatatctctg 3746467  T

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Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 3745964 - 3746136
Alignment:
Q  18 tttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3745964 tttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttcttggt 3746063  T
Q  118 tgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttcaaatgatggtga 190  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3746064 tgtttaggtgtaacaatttggggtctattgaacgaacaaaatcataagtttcttctttttcaaatgatggtga 3746136  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 3751781 - 3751948
Alignment:
Q  18 tttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgt 117  Q
    ||||||||||||||| |||| |||| |||||||| ||| || ||||| ||||||| ||| ||||||||| ||||||||||||||||||| |||||||| |    
T  3751781 tttagcttcaatggtggtggaacaattgtaattgcagtgggatttttcccactcaagatatcatgccaatagaatctgaaatgacttagtttttctttct 3751880  T
Q  118 tgtttaggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttcaaatgat 185  Q
    ||||||||  |||||||||  ||||||||| ||||||||||||| ||||||||| |||||| ||||||    
T  3751881 tgtttaggcttaacaatttgcggtctattggacgaacaaaatcaaaagtttcttgtttttctaatgat 3751948  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 178
Target Start/End: Original strand, 3781187 - 3781314
Alignment:
Q  51 gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaac 150  Q
    ||||| || ||||||||||||| || |||||||||| |||||||||||||||||||||||||||| |||||||||  |||||||||  | ||||| | ||    
T  3781187 gaagttggattttttccactcaagacgtcatgccaatagaatctgaaatgacttagcttttctttcttgtttaggcctaacaatttgcgatctatcggac 3781286  T
Q  151 gaacaaaatcataagtttcttctttttc 178  Q
    ||||||||||  |||| |||| ||||||    
T  3781287 gaacaaaatcgaaagtgtcttgtttttc 3781314  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 3762772 - 3762926
Alignment:
Q  24 ttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgttta 123  Q
    ||||||||| || | |||| ||||||||  |||||||| |||||||| |  |||||||||||  ||||||| ||||| ||||| ||||| || |||||||    
T  3762772 ttcaatggtggttgaacaattgtaattgttgtagggttatttccacttagtatgtcatgccagtagaatctaaaatggcttagtttttccttcttgttta 3762871  T
Q  124 ggtgtaacaattttgggtctattgaacgaacaaaatcataagtttcttctttttc 178  Q
    ||  |||||| ||  ||||||||| ||||||||||||| |||||||||| |||||    
T  3762872 ggcctaacaacttgcggtctattggacgaacaaaatcaaaagtttcttcattttc 3762926  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 3767203 - 3767313
Alignment:
Q  51 gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaac 150  Q
    ||||||||||||||||||||||  |||||||||||| | ||| ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| ||    
T  3767203 gaagtagggttttttccactcactatgtcatgccaataaaatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac 3767302  T
Q  151 gaacaaaatca 161  Q
    |||||||||||    
T  3767303 gaacaaaatca 3767313  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 51 - 183
Target Start/End: Original strand, 3776874 - 3777006
Alignment:
Q  51 gaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttctttgttgtttaggtgtaacaattttgggtctattgaac 150  Q
    ||||| || ||||||||||| |  |||||||||||| | ||| ||||||||||||||||||| || |||||||||  |||||| ||  | ||||||| ||    
T  3776874 gaagttggattttttccactaactatgtcatgccaatataatttgaaatgacttagcttttccttcttgtttaggcctaacaacttgcgatctattggac 3776973  T
Q  151 gaacaaaatcataagtttcttctttttcaaatg 183  Q
    ||||||||||| | || ||||||||||| ||||    
T  3776974 gaacaaaatcaaaggtatcttctttttctaatg 3777006  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 3755648 - 3755742
Alignment:
Q  18 tttagcttcaatggtagtggtacaactgtaattgaagtagggttttttccactcatgatgtcatgccaaaagaatctgaaatgacttagcttttc 112  Q
    ||||| |||| |||| |||| ||||||| || |||||||||||||||||||||||  ||||| |||||  ||||||||||||||||||| |||||    
T  3755648 tttagtttcattggtggtgggacaactgcaactgaagtagggttttttccactcactatgtcgtgccagtagaatctgaaatgacttagtttttc 3755742  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 522
Target Start/End: Original strand, 13538252 - 13538336
Alignment:
Q  439 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 522  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  13538252 tctagtggctagattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 13538336  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 522
Target Start/End: Original strand, 31351661 - 31351754
Alignment:
Q  430 atcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctctg 522  Q
    |||| ||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| | | ||||||||| | |||||| |||| | ||||||||    
T  31351661 atcaagtagtctagtggctagattcacacatattatgtgtggagaaatgggaaatccggagttcgaaccccgacccctgcacaaattatctctg 31351754  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 480
Target Start/End: Original strand, 38415494 - 38415533
Alignment:
Q  441 tagtggctagattcaaacacattatgtatggagaaatgga 480  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  38415494 tagtggctagattcacacacattatgtatgaagaaatgga 38415533  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 498
Target Start/End: Original strand, 35010382 - 35010439
Alignment:
Q  441 tagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 498  Q
    ||||||||||||||| ||||||||||| ||||||| ||| |||| | | |||||||||    
T  35010382 tagtggctagattcatacacattatgtgtggagaagtgggaaatccggagttcgaacc 35010439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 515
Target Start/End: Complemental strand, 1028836 - 1028751
Alignment:
Q  431 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataat 515  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||| || | ||| | | |||||||||||| ||||| ||||||||    
T  1028836 tcaggtagtctagtggctagattcacacacattatgtatgaagaagtgaagaatccggagttcgaacctcagcccctgcacataat 1028751  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 28300194 - 28300139
Alignment:
Q  443 gtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacc 498  Q
    ||||||||||||| ||||||||||||||||||| |||  ||| | |||||||||||    
T  28300194 gtggctagattcacacacattatgtatggagaagtggggaatccggggttcgaacc 28300139  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 19756417 - 19756461
Alignment:
Q  431 tcaggtaatctagtggctagattcaaacacattatgtatggagaa 475  Q
    |||||||  |||||||||||||||| ||||||||||| |||||||    
T  19756417 tcaggtagcctagtggctagattcacacacattatgtgtggagaa 19756461  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 518
Target Start/End: Complemental strand, 2098864 - 2098777
Alignment:
Q  431 tcaggtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctcacccctacacataatatc 518  Q
    |||| |||||||||||||||||||| ||||||||| | ||||||| |||| ||| | ||||||| |   | |||||||||||||||||    
T  2098864 tcagataatctagtggctagattcacacacattatatgtggagaagtggagaatccggggttcggattccgcccctacacataatatc 2098777  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 37307769 - 37307687
Alignment:
Q  440 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctc-acccctacacataatatctct 521  Q
    |||||||||||||||||||||||||| | ||||||| |||  ||| | | ||||||||| | ||||| |||||||||||||||    
T  37307769 ctagtggctagattcaaacacattatttgtggagaagtggggaatccggagttcgaaccccgaccccgacacataatatctct 37307687  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 522
Target Start/End: Original strand, 9667228 - 9667312
Alignment:
Q  439 tctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaacctca-cccctacacataatatctctg 522  Q
    |||||||||| |||||| ||||||||||||||||||| ||| ||||   ||||||||||  || |||||||||| | ||||||||    
T  9667228 tctagtggctggattcacacacattatgtatggagaagtgggaaatttggggttcgaactccagcccctacacaaattatctctg 9667312  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 27227261 - 27227297
Alignment:
Q  439 tctagtggctagattcaaacacattatgtatggagaa 475  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27227261 tctagtggctagattcaaacacattatgtgtggagaa 27227297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 23982130 - 23982068
Alignment:
Q  435 gtaatctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 497  Q
    ||||||||||||||||||||| |||||||||||   |||||||||| ||| | | ||||||||    
T  23982130 gtaatctagtggctagattcacacacattatgtgcagagaaatggagaatccggagttcgaac 23982068  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 24250144 - 24250201
Alignment:
Q  440 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaac 497  Q
    |||||| ||||||||| ||||||||||| |||| || |||| ||| ||||||||||||    
T  24250144 ctagtgactagattcacacacattatgtgtggaaaagtggagaatccagggttcgaac 24250201  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 47684484 - 47684520
Alignment:
Q  439 tctagtggctagattcaaacacattatgtatggagaa 475  Q
    |||| |||||||||||| |||||||||||||||||||    
T  47684484 tctattggctagattcacacacattatgtatggagaa 47684520  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 522
Target Start/End: Original strand, 9737574 - 9737657
Alignment:
Q  440 ctagtggctagattcaaacacattatgtatggagaaatggaaaatacagggttcgaa-cctcacccctacacataatatctctg 522  Q
    ||||||| || ||||| ||||||||||| | ||||||| |||||| |  |||||||| ||| |||||| |||||||||||||||    
T  9737574 ctagtggttatattcacacacattatgtgtagagaaatagaaaattcgaggttcgaaccctgacccctgcacataatatctctg 9737657  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 52910376 - 52910421
Alignment:
Q  430 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 475  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  52910376 atcaggtagtctagtgactagattcacacacattatgtgtggagaa 52910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 11988928 - 11988964
Alignment:
Q  439 tctagtggctagattcaaacacattatgtatggagaa 475  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  11988928 tctagtggctagattcacacacattatgtgtggagaa 11988964  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 37123676 - 37123631
Alignment:
Q  430 atcaggtaatctagtggctagattcaaacacattatgtatggagaa 475  Q
    |||| ||| ||||||||||||||||| ||||||||||| |||||||    
T  37123676 atcaagtagtctagtggctagattcacacacattatgtgtggagaa 37123631  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 8915675 - 8915639
Alignment:
Q  439 tctagtggctagattcaaacacattatgtatggagaa 475  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  8915675 tctagtggctagattcacacacattatttatggagaa 8915639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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