View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3696_low_5 (Length: 456)

Name: NF3696_low_5
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3696_low_5
NF3696_low_5
[»] chr2 (1 HSPs)
chr2 (249-446)||(14361255-14361451)
[»] chr3 (5 HSPs)
chr3 (135-248)||(37627725-37627839)
chr3 (180-250)||(37628419-37628490)
chr3 (16-90)||(37627882-37627956)
chr3 (194-248)||(36369887-36369941)
chr3 (190-248)||(30626472-30626530)
[»] chr6 (3 HSPs)
chr6 (180-250)||(13852960-13853031)
chr6 (199-252)||(33463776-33463830)
chr6 (199-250)||(33464348-33464400)
[»] chr1 (3 HSPs)
chr1 (190-249)||(38459409-38459468)
chr1 (190-248)||(38460688-38460746)
chr1 (199-249)||(49680317-49680368)
[»] chr7 (1 HSPs)
chr7 (180-248)||(2564738-2564806)
[»] chr4 (1 HSPs)
chr4 (199-248)||(29337158-29337208)
[»] chr8 (1 HSPs)
chr8 (194-250)||(3294791-3294847)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 249 - 446
Target Start/End: Original strand, 14361255 - 14361451
Alignment:
Q  249 tttataaaatgatagagacaattatttatattacaacacgaattttcaatccgactagatagaaactactatccattgtaattcctaatgaattactaag 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14361255 tttataaaatgatagagacaattatttatattacaacacgaattttca-tccgactagatagagactactatccattgtaattcctaatgaattactaag 14361353  T
Q  349 tgatataactaaagaataaagggaggaatgaatatgagagcaaacattaaaattgttaacaaattacacannnnnnngttccttaaaatacccctatg 446  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||    
T  14361354 tgatataattaaagaataaagagaggaataaatatgagagcaaacattaaaattgctaacaaattacacatttttttgttccttaaaatacccctatg 14361451  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 37627839 - 37627725
Alignment:
Q  135 ggctacaaaagtgaacaggtagcaggtacagaaatnnnnnnng-tcgatgaggtgtctaattttgattggtgtgtgttaaagagtatgttagagaatgtg 233  Q
    |||||||||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||    
T  37627839 ggctacaaaagtgaacaggtagcaggtaaagaaataaaaaaaaatcgatgaggtgtctaattttgattggtgtgtgttaaagagtgtgttagggagtgtg 37627740  T
Q  234 tccctaacatttctc 248  Q
    |||||| ||||||||    
T  37627739 tccctagcatttctc 37627725  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 37628419 - 37628490
Alignment:
Q  180 gatgaggtgtctaattttgattggtgtgtgtt-aaagagtatgttagagaatgtgtccctaacatttctctt 250  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||| ||||||||||    
T  37628419 gatgaggtgtctaattttgattggtgtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctctt 37628490  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 37627956 - 37627882
Alignment:
Q  16 agaaaaacaccaacttgatttttggcaaatgagaacggttttggtacagagattgagtggtgagagatgaaaagt 90  Q
    ||||||||| |||||| |||||||||  ||||||||||||||||| | |||||||||||| ||||||||||||||    
T  37627956 agaaaaacagcaacttcatttttggcggatgagaacggttttggtgcggagattgagtggggagagatgaaaagt 37627882  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 36369887 - 36369941
Alignment:
Q  194 ttttgattggtgtgtgttaaagagtatgttagagaatgtgtccctaacatttctc 248  Q
    |||| ||||| ||||||||||||||||||||| || |||| ||||||||||||||    
T  36369887 tttttattggagtgtgttaaagagtatgttagggagtgtgaccctaacatttctc 36369941  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 30626530 - 30626472
Alignment:
Q  190 ctaattttgattggtgtgtgttaaagagtatgttagagaatgtgtccctaacatttctc 248  Q
    |||||||| ||||| |||||||||||||| |||||| || |||| ||||| ||||||||    
T  30626530 ctaatttttattggagtgtgttaaagagtgtgttagggagtgtgaccctagcatttctc 30626472  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 13852960 - 13853031
Alignment:
Q  180 gatgaggtgtctaattttgattggtgtgtgtt-aaagagtatgttagagaatgtgtccctaacatttctctt 250  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||| || |||| ||||| ||||||||||    
T  13852960 gatgaggtggctagttttgattggtgtgtgttaaaagagtgtgttagggagtgtgaccctagcatttctctt 13853031  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 33463830 - 33463776
Alignment:
Q  199 attggtgtgtgttaaagag-tatgttagagaatgtgtccctaacatttctcttta 252  Q
    ||||||||||||||||| | | ||||||||| |||||||||| ||||||||||||    
T  33463830 attggtgtgtgttaaaggggtgtgttagagagtgtgtccctagcatttctcttta 33463776  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 33464348 - 33464400
Alignment:
Q  199 attggtgtgtgtt-aaagagtatgttagagaatgtgtccctaacatttctctt 250  Q
    ||||||||||||| |||| || ||||||||| |||||||||| ||||||||||    
T  33464348 attggtgtgtgttaaaagggtgtgttagagagtgtgtccctagcatttctctt 33464400  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 38459468 - 38459409
Alignment:
Q  190 ctaattttgattggtgtgtgttaaagagtatgttagagaatgtgtccctaacatttctct 249  Q
    |||||||| ||||| |||||||||||||| |||||| || |||||||||| |||||||||    
T  38459468 ctaatttttattggagtgtgttaaagagtgtgttagggagtgtgtccctagcatttctct 38459409  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 38460688 - 38460746
Alignment:
Q  190 ctaattttgattggtgtgtgttaaagagtatgttagagaatgtgtccctaacatttctc 248  Q
    |||||||| ||||| |||||||||||||| |||||| || |||||||||| ||||||||    
T  38460688 ctaatttttattggagtgtgttaaagagtgtgttagggagtgtgtccctagcatttctc 38460746  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 49680317 - 49680368
Alignment:
Q  199 attggtgtgtgttaaa-gagtatgttagagaatgtgtccctaacatttctct 249  Q
    |||||||||||||||| | || ||||||||||||| ||||||||||||||||    
T  49680317 attggtgtgtgttaaaagggtgtgttagagaatgtatccctaacatttctct 49680368  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 2564806 - 2564738
Alignment:
Q  180 gatgaggtgtctaattttgattggtgtgtgttaaagagtatgttagagaatgtgtccctaacatttctc 248  Q
    ||||| ||| |||||||  ||||| ||||||||||||||||||||| || |||| ||||| ||||||||    
T  2564806 gatgatgtggctaatttctattggagtgtgttaaagagtatgttagggagtgtgaccctagcatttctc 2564738  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 248
Target Start/End: Complemental strand, 29337208 - 29337158
Alignment:
Q  199 attggtgtgtgtt-aaagagtatgttagagaatgtgtccctaacatttctc 248  Q
    ||||||||||||| ||||||| ||||||||| |||||||||| ||||||||    
T  29337208 attggtgtgtgttaaaagagtgtgttagagagtgtgtccctagcatttctc 29337158  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 3294847 - 3294791
Alignment:
Q  194 ttttgattggtgtgtgttaaagagtatgttagagaatgtgtccctaacatttctctt 250  Q
    |||| ||||| |||||| |||| || ||||||||| ||||||||||||||| |||||    
T  3294847 ttttaattggagtgtgtcaaagggtgtgttagagagtgtgtccctaacattcctctt 3294791  T

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