View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3696_low_6 (Length: 430)
Name: NF3696_low_6
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3696_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 399
Target Start/End: Original strand, 31334108 - 31334482
Alignment:
| Q |
19 |
gctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaag |
118 |
Q |
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| T |
31334108 |
gctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaaa |
31334207 |
T |
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| Q |
119 |
ggcaagaaccataagattgctgattttctttctacttgtgtttggattccccctgagcttgatgaaatcatggtaaatgacaatattttttgcaaaagtt |
218 |
Q |
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| T |
31334208 |
ggcaagaaccataagattgctgattttctttctacttgtgtttggatt-cccctgagtttgatgaaatcaaggtaaatgacaatattttttgcaaaagtt |
31334306 |
T |
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| Q |
219 |
acactttatacggctgtaataaaattacaatgtcaacgtgtttctgacaaactcatgctgacaaaataaaagatcaccaaattatggtaatgtgaactca |
318 |
Q |
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| T |
31334307 |
acactttatacggctgtaataaaattacaatgtcaacgtgtttctgtcaaactc-----gacaaaataaaagatcaccaaattatggtaatgtgaactca |
31334401 |
T |
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| Q |
319 |
tgcttgattatcaattataagttgtaataatatcttacaaatatataaattttatgtatgagatggaagtttcatattcaa |
399 |
Q |
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| T |
31334402 |
tgtttgattatcaattataaattgtaataatatcttacaaaaatataaattttatgtatgagataggagtttcatattcaa |
31334482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 31321855 - 31322250
Alignment:
| Q |
19 |
gctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaag |
118 |
Q |
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| T |
31321855 |
gctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaagg |
31321954 |
T |
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| Q |
119 |
ggcaagaaccataagattgctgattttctttctacttgtgtttggattccccctgagcttgatgaaatcatggtaaatgacaatattttttgcaaaagtt |
218 |
Q |
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| T |
31321955 |
ggcaagaatcaaaagattgttgattgt-tttctacgcatacttgagttgacaatgagtttgatgatttcacggtgaaccacgttaatttttgcagtagct |
31322053 |
T |
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| Q |
219 |
acactttatacggctgtaataaaattacaatgtcaacgtg-tttctgacaaactcatgctgacaaaataaaagatcaccaaattatggtaatgtgaactc |
317 |
Q |
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| T |
31322054 |
atgctttatagagcttcaattaaattacaatatcactttgattcccgtcaaactcacggtgacaaaataaaagattgctaaattatggtaatgtgtactc |
31322153 |
T |
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| Q |
318 |
atgcttgat----tatcaattataagttgtaataatatcttacaaatatataaattttatgtatgagatggaagtttcatattcaagcatctttgtgttg |
413 |
Q |
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| T |
31322154 |
atgtttgattatatatcaaatataagttgtaatcatatcttcaaaatat-ttaactttatg--tgagatggatgtttcatgttcaagcatcattgtgttg |
31322250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 10926283 - 10926351
Alignment:
| Q |
39 |
tgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagatttt |
108 |
Q |
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| T |
10926283 |
tgttagtgttaatcctctaataactattcaatcaactgcattttgtatttcaaata-gattgtaaatttt |
10926351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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