View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3696_low_9 (Length: 425)

Name: NF3696_low_9
Description: NF3696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3696_low_9
NF3696_low_9
[»] chr5 (20 HSPs)
chr5 (156-410)||(7737041-7737295)
chr5 (21-153)||(12806991-12807125)
chr5 (21-153)||(25773654-25773788)
chr5 (15-153)||(10285189-10285329)
chr5 (15-153)||(30720624-30720764)
chr5 (15-151)||(40886742-40886880)
chr5 (15-151)||(36561231-36561369)
chr5 (21-153)||(37900762-37900896)
chr5 (21-147)||(7277560-7277688)
chr5 (21-120)||(25683366-25683467)
chr5 (26-153)||(16983263-16983393)
chr5 (23-110)||(30403101-30403191)
chr5 (23-153)||(734478-734609)
chr5 (35-108)||(23098386-23098461)
chr5 (23-153)||(39070888-39071020)
chr5 (23-99)||(16054173-16054249)
chr5 (23-154)||(11319563-11319696)
chr5 (23-98)||(1056422-1056498)
chr5 (109-153)||(15305216-15305260)
chr5 (347-410)||(7768105-7768165)
[»] chr8 (29 HSPs)
chr8 (15-153)||(43275531-43275669)
chr8 (21-151)||(30999661-30999791)
chr8 (15-153)||(40918863-40919001)
chr8 (21-154)||(2540069-2540204)
chr8 (15-153)||(11174355-11174495)
chr8 (15-153)||(40058435-40058575)
chr8 (25-153)||(3585456-3585586)
chr8 (15-149)||(11646457-11646593)
chr8 (15-153)||(37345576-37345716)
chr8 (15-151)||(7146920-7147058)
chr8 (15-153)||(36068085-36068225)
chr8 (21-153)||(27035002-27035135)
chr8 (15-153)||(20546421-20546559)
chr8 (28-154)||(28562425-28562554)
chr8 (23-110)||(28326797-28326883)
chr8 (23-100)||(13881094-13881174)
chr8 (105-154)||(10646596-10646645)
chr8 (105-153)||(8697898-8697946)
chr8 (21-110)||(37510314-37510405)
chr8 (105-153)||(41307961-41308009)
chr8 (105-153)||(45278701-45278749)
chr8 (28-154)||(28567923-28568051)
chr8 (28-154)||(28575516-28575644)
chr8 (105-153)||(40486453-40486501)
chr8 (23-151)||(35866621-35866751)
chr8 (54-100)||(26629182-26629228)
chr8 (28-99)||(10181002-10181074)
chr8 (23-100)||(39151464-39151542)
chr8 (60-108)||(30906869-30906917)
[»] chr3 (32 HSPs)
chr3 (15-153)||(36881287-36881425)
chr3 (15-153)||(198860-199000)
chr3 (15-153)||(13364848-13364988)
chr3 (15-153)||(19241800-19241940)
chr3 (15-153)||(23088063-23088203)
chr3 (15-153)||(46694242-46694382)
chr3 (15-151)||(3383083-3383221)
chr3 (21-153)||(29375143-29375277)
chr3 (21-149)||(43750146-43750276)
chr3 (39-164)||(13702762-13702890)
chr3 (63-151)||(32835138-32835226)
chr3 (80-153)||(27707363-27707436)
chr3 (105-153)||(44277455-44277503)
chr3 (73-141)||(48820444-48820512)
chr3 (23-106)||(19897067-19897152)
chr3 (56-153)||(37293442-37293539)
chr3 (105-153)||(12094587-12094635)
chr3 (32-108)||(44522491-44522567)
chr3 (28-99)||(37780996-37781069)
chr3 (89-161)||(48963152-48963223)
chr3 (105-153)||(19911514-19911562)
chr3 (15-67)||(27707120-27707172)
chr3 (23-151)||(53559750-53559880)
chr3 (32-107)||(1455297-1455374)
chr3 (105-149)||(4235760-4235803)
chr3 (105-153)||(38805250-38805298)
chr3 (23-69)||(18356007-18356053)
chr3 (28-69)||(6901655-6901696)
chr3 (15-110)||(26105079-26105176)
chr3 (105-149)||(4226716-4226759)
chr3 (117-153)||(19912174-19912210)
chr3 (117-153)||(38806341-38806377)
[»] chr6 (21 HSPs)
chr6 (21-153)||(7761306-7761438)
chr6 (15-153)||(29260197-29260337)
chr6 (21-153)||(1605584-1605718)
chr6 (15-151)||(30734615-30734753)
chr6 (15-153)||(8626487-8626627)
chr6 (21-152)||(13757214-13757347)
chr6 (21-143)||(31559874-31559998)
chr6 (21-153)||(15064832-15064966)
chr6 (45-152)||(30734772-30734879)
chr6 (15-149)||(17942452-17942590)
chr6 (21-143)||(8235639-8235763)
chr6 (15-153)||(4129440-4129572)
chr6 (23-107)||(21277574-21277659)
chr6 (105-153)||(19996715-19996763)
chr6 (23-109)||(14287038-14287125)
chr6 (47-100)||(33845449-33845502)
chr6 (30-110)||(3798151-3798233)
chr6 (28-107)||(11370630-11370711)
chr6 (23-108)||(26860819-26860902)
chr6 (117-153)||(19996327-19996363)
chr6 (23-63)||(30235447-30235487)
[»] scaffold1431 (1 HSPs)
scaffold1431 (15-160)||(31-179)
[»] chr7 (19 HSPs)
chr7 (15-153)||(27813816-27813956)
chr7 (21-153)||(10981513-10981647)
chr7 (15-153)||(36453256-36453396)
chr7 (15-151)||(25614485-25614621)
chr7 (21-153)||(47110456-47110588)
chr7 (21-151)||(40348967-40349099)
chr7 (31-100)||(16360442-16360511)
chr7 (23-108)||(16662146-16662231)
chr7 (23-108)||(17636506-17636591)
chr7 (28-110)||(7743542-7743625)
chr7 (28-110)||(3091565-3091649)
chr7 (23-108)||(37983206-37983289)
chr7 (105-153)||(25060133-25060181)
chr7 (21-98)||(27942177-27942256)
chr7 (105-153)||(2911548-2911596)
chr7 (21-100)||(3498892-3498973)
chr7 (34-92)||(27021566-27021624)
chr7 (117-165)||(2910851-2910900)
chr7 (32-69)||(28200298-28200335)
[»] chr1 (39 HSPs)
chr1 (15-153)||(23045411-23045551)
chr1 (15-151)||(47037984-47038120)
chr1 (25-153)||(284338-284468)
chr1 (15-153)||(40783789-40783929)
chr1 (21-165)||(321618-321765)
chr1 (21-153)||(24772043-24772177)
chr1 (21-153)||(27211102-27211236)
chr1 (21-160)||(23526237-23526379)
chr1 (21-151)||(46771644-46771776)
chr1 (21-138)||(33082765-33082884)
chr1 (21-143)||(52037260-52037382)
chr1 (32-107)||(1837978-1838053)
chr1 (21-108)||(1749357-1749446)
chr1 (23-110)||(52478016-52478103)
chr1 (19-99)||(7765072-7765154)
chr1 (23-110)||(34458863-34458950)
chr1 (105-153)||(3943065-3943113)
chr1 (105-153)||(9588675-9588723)
chr1 (105-153)||(41959083-41959131)
chr1 (23-153)||(51064893-51065028)
chr1 (105-151)||(13984991-13985037)
chr1 (23-108)||(27143151-27143239)
chr1 (23-110)||(31003926-31004012)
chr1 (31-110)||(40261419-40261501)
chr1 (35-98)||(40562733-40562797)
chr1 (38-110)||(3657125-3657199)
chr1 (23-99)||(18396754-18396832)
chr1 (117-153)||(9589631-9589667)
chr1 (31-99)||(25929173-25929241)
chr1 (92-144)||(40564241-40564293)
chr1 (117-153)||(44227853-44227889)
chr1 (105-153)||(44228228-44228276)
chr1 (75-110)||(14351954-14351989)
chr1 (23-90)||(24876633-24876699)
chr1 (23-90)||(31061594-31061662)
chr1 (105-150)||(1168369-1168414)
chr1 (34-111)||(21623680-21623756)
chr1 (117-153)||(3943763-3943799)
chr1 (117-153)||(41959809-41959845)
[»] chr4 (26 HSPs)
chr4 (15-151)||(24706379-24706517)
chr4 (21-153)||(25704656-25704790)
chr4 (21-153)||(21310430-21310564)
chr4 (15-153)||(14261049-14261189)
chr4 (21-151)||(22321405-22321537)
chr4 (21-153)||(12071566-12071700)
chr4 (15-153)||(40122617-40122757)
chr4 (21-153)||(34324720-34324855)
chr4 (15-151)||(44568844-44568982)
chr4 (15-153)||(21661667-21661807)
chr4 (15-153)||(21670431-21670571)
chr4 (15-151)||(50767871-50768009)
chr4 (21-152)||(20249151-20249283)
chr4 (21-153)||(31892243-31892373)
chr4 (45-148)||(1988046-1988150)
chr4 (23-107)||(32543532-32543617)
chr4 (23-110)||(20714488-20714577)
chr4 (31-152)||(26676714-26676837)
chr4 (28-108)||(6129093-6129175)
chr4 (21-86)||(21064834-21064899)
chr4 (23-110)||(19692771-19692860)
chr4 (23-110)||(19703356-19703445)
chr4 (23-110)||(48652268-48652356)
chr4 (37-98)||(34284171-34284234)
chr4 (105-143)||(19361662-19361700)
chr4 (23-92)||(51777687-51777755)
[»] chr2 (19 HSPs)
chr2 (15-153)||(23366794-23366934)
chr2 (15-153)||(39938175-39938315)
chr2 (21-153)||(3518913-3519047)
chr2 (15-153)||(1102508-1102648)
chr2 (15-130)||(1646317-1646432)
chr2 (21-153)||(12969877-12970011)
chr2 (33-153)||(37673887-37674009)
chr2 (21-81)||(22388273-22388335)
chr2 (105-153)||(34224378-34224426)
chr2 (33-100)||(39562037-39562104)
chr2 (23-99)||(14779838-14779914)
chr2 (23-110)||(19976380-19976468)
chr2 (45-110)||(35179097-35179164)
chr2 (28-95)||(34242040-34242107)
chr2 (23-110)||(18078104-18078193)
chr2 (23-107)||(32840312-32840401)
chr2 (23-148)||(1002870-1002997)
chr2 (23-83)||(4917839-4917899)
chr2 (34-95)||(14117753-14117814)
[»] scaffold0054 (1 HSPs)
scaffold0054 (21-153)||(45459-45593)
[»] scaffold0062 (1 HSPs)
scaffold0062 (21-143)||(403-525)
[»] scaffold1770 (1 HSPs)
scaffold1770 (15-153)||(175-307)
[»] scaffold0056 (1 HSPs)
scaffold0056 (23-108)||(70874-70961)
[»] scaffold0257 (1 HSPs)
scaffold0257 (105-153)||(23472-23520)
[»] scaffold0025 (1 HSPs)
scaffold0025 (21-92)||(65301-65375)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 156 - 410
Target Start/End: Original strand, 7737041 - 7737295
Alignment:
Q  156 tatatttttatgatcaacacacttaccaatgcctcatccatacgggcatgacgtcgcattcatgcattccatttactcaaatgtgttagttggtagctag 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737041 tatatttttatgatcaacacacttaccaatgcctcatccatacgggcatgacgtcgcattcatgcattccatttactcaaatgtgttagttggtagctag 7737140  T
Q  256 atacaaataattcgtagcacactatttactactatagcaagtggcatgcacatacttcattgcttaaaacattagtacaaaagagaaagccagtgcaatc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7737141 atacaaataattcgtagcacactatttactactatagcaagtggcatgcacatacttcattgcttaaaacattaatacaaaagagaaagccagtgcaatc 7737240  T
Q  356 acaatagacacaaacaaatataatcaaacatggtgaacacggtgaacgtaatttg 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7737241 acaatagacacaaacaaatataatcaaacatggtgaacacggtgaacgtaatttg 7737295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 12806991 - 12807125
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12806991 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttaatgcaa 12807090  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  12807091 tttctccaaaatggacatgtattttgaaacggagg 12807125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 25773788 - 25773654
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25773788 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaa 25773689  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  25773688 tttctccaaaatggacatgtattttgaaacggagg 25773654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 10285189 - 10285329
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  10285189 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttcttggtta 10285288  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||||||||||| ||||||||||||||||    
T  10285289 atgcaatttctccaaaatagacatctattttgaaacggagg 10285329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 30720624 - 30720764
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30720624 gagaaaaaaataaaatgaaataatagatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 30720723  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  30720724 gtgcaatttctccaaaatggacatgtattttgaaacggagg 30720764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 40886742 - 40886880
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  40886742 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaatacacacatattttcatcaaaaataacaaaatttattcgatttcttggtta 40886841  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  40886842 gtgcaatttctccaaaatgaacatgtattttgaaacgga 40886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 36561231 - 36561369
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||    
T  36561231 gagaaaaaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgatta 36561330  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
     |||||||| || ||||| ||||||||||||||||||||    
T  36561331 ctgcaatttttctaaaatggacatgtattttgaaacgga 36561369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 37900762 - 37900896
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||||||||||| |||||    
T  37900762 aaaatagaatgaaataataaatggttaagggtattatagaaaacacacatataatttcatcaaaaatatcaaaatttatttagtttcttggttactgcaa 37900861  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||  ||||||||||||||||||    
T  37900862 tttctccaaaatggatgtgtattttgaaacggagg 37900896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 7277560 - 7277688
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||| ||||||| | |||    
T  7277560 aaaatataatgaaataataaatggttaaaggtattatagaaaacacacacataatttgatcaaaaataacaaaatttatttggtttattggttactccaa 7277659  T
Q  119 tttctccaaaatagacatgtattttgaaa 147  Q
    |||||||||||||||||||||||||||||    
T  7277660 tttctccaaaatagacatgtattttgaaa 7277688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 25683366 - 25683467
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||| |||||    
T  25683366 aaaatagaataaaataataaatggttaagggtattatagaaaacacacacataattttatcaaaaataacaaaatttatttggtttcttggttattgcaa 25683465  T
Q  119 tt 120  Q
    ||    
T  25683466 tt 25683467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 16983393 - 16983263
Alignment:
Q  26 aaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaat--ttatttggtttcttggttagtgcaattt 121  Q
    ||||| ||||||||| || ||||||||||| ||||||| ||||||||  |||||||||||| || ||||   ||||||||||||||||||| ||||||||    
T  16983393 aaaataaaataataa-tggttaagggtattgtagaaaaaacacatatcatttcatcaaaaaaaaaaaaaaaattatttggtttcttggttactgcaattt 16983295  T
Q  122 ctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||| ||||||||||||||||| ||||    
T  16983294 ctccaaaatggacatgtattttgaaacagagg 16983263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 30403101 - 30403191
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaaca---cacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |   |||| | ||||||||||||||||||||||||||||||||||||||    
T  30403101 aataaaatgaaataacaaatgattaagagtattatagaaaaaaaaacacagaatttcatcaaaaataacaaaatttatttggtttcttggt 30403191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 734478 - 734609
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag-aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaattt 121  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||| | | ||||||||| ||| |||||||||||||| ||  |||||  | | |||||    
T  734478 aatagaatgaaataataaatgagtaagggtattatagaaaaacacaaagaatttcatcaataatgacaaaatttatttgattctttggtatgagtaattt 734577  T
Q  122 ctccaaaatagacatgtattttgaaacggagg 153  Q
    || |||||| |||| ||||| |||||||||||    
T  734578 cttcaaaatggacaagtattgtgaaacggagg 734609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 23098386 - 23098461
Alignment:
Q  35 taataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    ||||||||| ||||||||||||||| |||||  |||||| ||||||||||||||||||||||||||| ||||||||    
T  23098386 taataaatggttaagggtattataggaaacatgcacataatttcatcaaaaataacaaaatttatttagtttcttg 23098461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 39071020 - 39070888
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||     ||||||||||||| |||| ||||||||| || |||  |  ||| ||||    
T  39071020 aatagaatgaaataataaatgagtaagggtattatagaaaaaacacaacagatttcatcaaaaatgacaacatttatttgattccttaatatgtgtaatt 39070921  T
Q  121 tctccaaaatagacatgtattttgaaacggagg 153  Q
    ||| ||||||  ||| ||||| |||||||||||    
T  39070920 tcttcaaaatgaacaagtattgtgaaacggagg 39070888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 16054249 - 16054173
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttattt 99  Q
    |||| ||| |||||||||||| | |||| |||||||||||| ||||| | |||||| ||||||||||||||||||||    
T  16054249 aatagaataaaataataaatggtcaaggatattatagaaaaaacacaaaatttcataaaaaataacaaaatttattt 16054173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 11319696 - 11319563
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||| |   |||||| |||||| |||| ||||||||| ||  || ||  ||| ||||    
T  11319696 aatagaatgaaataataaatgagtaagggtattatagaaaaaaaacaaagaatttcataaaaaattacaacatttatttgattcattagtatgtgtaatt 11319597  T
Q  121 tctccaaaatagacatgtattttgaaacggagga 154  Q
    ||| |||||| ||||  |||| ||||||||||||    
T  11319596 tcttcaaaatggacaaatattgtgaaacggagga 11319563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 1056422 - 1056498
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag-aaaacacacatattttcatcaaaaataacaaaatttatt 98  Q
    |||| |||||||||||||||||| ||  ||||||||| |||||||| | | |||||| |||||||||||||||||||    
T  1056422 aatataatgaaataataaatgatcaatagtattatagaaaaacacaaagaatttcattaaaaataacaaaatttatt 1056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 15305216 - 15305260
Alignment:
Q  109 gttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  15305216 gttactgcaatttctccaaaatggacatgtattttgaaacggagg 15305260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 410
Target Start/End: Original strand, 7768105 - 7768165
Alignment:
Q  347 agtgcaatcacaatagacacaaacaaatataatcaaacatggtgaacacggtgaacgtaatttg 410  Q
    ||||||||||||||||| |  ||||||| |||| |||||||||||||| |||||||||||||||    
T  7768105 agtgcaatcacaatagaaa--aacaaat-taattaaacatggtgaacatggtgaacgtaatttg 7768165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 8e-68; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 43275531 - 43275669
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43275531 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 43275630  T
Q  115 gcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  43275631 gcaatttctccaaaatggacatgtattttgaaacggagg 43275669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 30999661 - 30999791
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30999661 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 30999760  T
Q  121 tctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||| ||||||||||||||||||||    
T  30999761 tctccaaaattgacatgtattttgaaacgga 30999791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 40918863 - 40919001
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  40918863 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatgttttcataaaaaataacaaaatttatttggtttcttggttagt 40918962  T
Q  115 gcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  40918963 gcaatttctccaaaatggacatgtattttgaaacggagg 40919001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 2540069 - 2540204
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2540069 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 2540168  T
Q  119 tttctccaaaatagacatgtattttgaaacggagga 154  Q
    |||||||||||| |||||||||||||||||||||||    
T  2540169 tttctccaaaatggacatgtattttgaaacggagga 2540204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 11174355 - 11174495
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  11174355 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 11174454  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  11174455 gtgcaatttctccaaaatgaacatgtattttgaaacggagg 11174495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 40058435 - 40058575
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  40058435 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 40058534  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  40058535 gtgcaatttctccgaaatggacatgtattttgaaacggagg 40058575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 3585586 - 3585456
Alignment:
Q  25 taaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3585586 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 3585487  T
Q  123 tccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||||||||    
T  3585486 tccaaaatggacatgtattttgaaacggagg 3585456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 11646457 - 11646593
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  11646457 gagaaaaaagtaaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtta 11646556  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacg 149  Q
    |||||||||||||||||| ||||||||||||||||||    
T  11646557 gtgcaatttctccaaaatggacatgtattttgaaacg 11646593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 37345716 - 37345576
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||     
T  37345716 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcattaaaaataacaaaatttatttggtttcttggttg 37345617  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  37345616 gtgcaatttcttcaaaatggacatgtattttgaaacggagg 37345576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 7147058 - 7146920
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  7147058 gagaaaaaaataaaatgaaataataaatgattaagggtattataaaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 7146959  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
     |||||||||| |||||| ||||||||||||||||||||    
T  7146958 ctgcaatttcttcaaaatggacatgtattttgaaacgga 7146920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 36068225 - 36068085
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||    
T  36068225 gagaaaaaagtaaaatgaaataattaatgattaagggtattatagaaaacacacatatattttcattaaaaataacaaaatttatttggttttttggtta 36068126  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    || ||||| ||||||||| ||||||||||||||||||||||    
T  36068125 gtacaattcctccaaaatggacatgtattttgaaacggagg 36068085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 27035135 - 27035002
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 119  Q
    |||||| |||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  27035135 aaaatagaatgaaataataaatggttaagggtattatagaaacacagacataatttcatcaaaaataaaaaaaattatttggtttcttggttactgcaat 27035036  T
Q  120 ttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||| ||||||||||||||||||||||    
T  27035035 ttctccaaaatggacatgtattttgaaacggagg 27035002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 20546421 - 20546559
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| |||||| |||||||||||||||  |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||  ||||||| ||  |    
T  20546421 gagaaaaaaatataatgaaataataaattgttaagggtatcatataaaacacacataatttcatcaaaaataacaaaatttatttaatttcttgattgtt 20546520  T
Q  115 gcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||| |||||| ||||| |||||||||| |||||    
T  20546521 gcaatttcttcaaaatggacatatattttgaaatggagg 20546559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 28562554 - 28562425
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctc 124  Q
    |||||||| |||||||| ||||||||||||||||||   |||| | | ||||||||||||| |||| ||||||||| || ||||||  ||| |||||||     
T  28562554 aatgaaatcataaatgagtaagggtattatagaaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttctt 28562455  T
Q  125 caaaatagacatgtattttgaaacggagga 154  Q
    |||||| |||| ||||||||||||||||||    
T  28562454 caaaatggacaagtattttgaaacggagga 28562425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 28326797 - 28326883
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| |||||||||||||||  ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||||    
T  28326797 aatagaatgaaataataaatagttaagagtattattgaaaa-acacataatttcatcaaaaataacaaaatttatttgatttcttggt 28326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 13881094 - 13881174
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaatttatttg 100  Q
    |||| ||||||||||||||||||||||||||||||||   ||||| |||| | ||||||||||||||||||||||||||||    
T  13881094 aatataatgaaataataaatgattaagggtattatagaaaaaaacgcacacaatttcatcaaaaataacaaaatttatttg 13881174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 10646645 - 10646596
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagga 154  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  10646645 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagga 10646596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 8697898 - 8697946
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  8697898 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 8697946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 37510405 - 37510314
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattat--agaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| | | | | ||| || |||||||||||||||||||| ||||||||||    
T  37510405 aaaataaaatgaaatattaaatgattaagggtattattgaaaaaatagaaagaattttattaaaaataacaaaatttatttagtttcttggt 37510314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 41307961 - 41308009
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  41307961 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 41308009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 45278701 - 45278749
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  45278701 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 45278749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 28568051 - 28567923
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctc 124  Q
    |||||||||||||||||  | |||||||||||||||   |||| | | |||||| |||||| |||| ||||||||| ||  |||||  ||| |||||||     
T  28568051 aatgaaataataaatgagca-gggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttctt 28567953  T
Q  125 caaaatagacatgtattttgaaacggagga 154  Q
    |||||| |||| ||||||||||||||||||    
T  28567952 caaaatggacaagtattttgaaacggagga 28567923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 28575644 - 28575516
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctc 124  Q
    |||||||||||||||||  | |||||||||||||||   |||| | | |||||| |||||| |||| ||||||||| ||  |||||  ||| |||||||     
T  28575644 aatgaaataataaatgagca-gggtattatagaaaaagacacaaagaatttcataaaaaatgacaacatttatttgattcattggtatgtgtaatttctt 28575546  T
Q  125 caaaatagacatgtattttgaaacggagga 154  Q
    |||||| |||| ||||||||||||||||||    
T  28575545 caaaatggacaagtattttgaaacggagga 28575516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 40486453 - 40486501
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  40486453 cttggttactgcaatttcttcaaaatggacatgtattttgaaacggagg 40486501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 35866751 - 35866621
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||| ||| |||||||||||| |||||||||||||||  |||||||| | | |||||| ||||||||||| |||||| |  |||||||||   |  ||||    
T  35866751 aatagaataaaataataaatgtttaagggtattatagaaaaaacacaaagaatttcatgaaaaataacaacatttatctaatttcttggtatatataatt 35866652  T
Q  121 tctccaaaatagacatgtattttgaaacgga 151  Q
    |||  ||||| |||| ||||| |||||||||    
T  35866651 tctttaaaatggacaagtattgtgaaacgga 35866621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 26629182 - 26629228
Alignment:
Q  54 ttatagaaaacacacatattttcatcaaaaataacaaaatttatttg 100  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||    
T  26629182 ttatagaaaaaacacataatttcatcaaacataacaaaatttatttg 26629228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 10181002 - 10181074
Alignment:
Q  28 aatgaaataataaatgattaagggtattat-agaaaacacacatattttcatcaaaaataacaaaatttattt 99  Q
    |||||||||||||||| |||| |||||||| | |||||| || || ||| || ||||||||||||||||||||    
T  10181002 aatgaaataataaatggttaacggtattataaaaaaacaaacgtaattttataaaaaataacaaaatttattt 10181074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 39151542 - 39151464
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacac-acatattttcatcaaaaataacaaaatttatttg 100  Q
    |||| ||| |||||||||||||| ||   |||||||||||| |  ||||| ||||||||||||||||||| ||||||||    
T  39151542 aatagaataaaataataaatgataaattatattatagaaaaaaatacataatttcatcaaaaataacaaagtttatttg 39151464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 30906869 - 30906917
Alignment:
Q  60 aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    ||||| |||| | |||||| ||||||||||||||||||||| |||||||    
T  30906869 aaaactcacaaaatttcataaaaaataacaaaatttatttgatttcttg 30906917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 36881425 - 36881287
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36881425 gagaaaaaaataaaatgaaataataaataattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 36881326  T
Q  115 gcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  36881325 gcaatttctccaaaatggacatgtattttgaaacggagg 36881287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 199000 - 198860
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |    
T  199000 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtca 198901  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  198900 gtgcaatttctccaaaatggacatgtattttgaaacggagg 198860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 13364988 - 13364848
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  13364988 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 13364889  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  13364888 gtgcaatttctccaaaatgaacatgtattttgaaacggagg 13364848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 19241800 - 19241940
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  19241800 gagaaaaaagtaaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggtta 19241899  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  19241900 gtgcaatttcaccaaaatggacatgtattttgaaacggagg 19241940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 23088063 - 23088203
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23088063 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 23088162  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||| |||||||||||| ||||||||||| ||||    
T  23088163 gtgcaatttcttcaaaatagacatatattttgaaacagagg 23088203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 46694242 - 46694382
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||    
T  46694242 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttgatta 46694341  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  46694342 gtgcaatttctccaaaaaggacatgtattttgaaacggagg 46694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 3383221 - 3383083
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  3383221 gagaaaaaaataaaatgaaataataaatgtttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 3383122  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
     ||||||||||||||||| ||||| ||||||||||||||    
T  3383121 ctgcaatttctccaaaatggacatatattttgaaacgga 3383083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 29375277 - 29375143
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||| |||| ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29375277 aaaaaaaaaagaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataagaaaatttatttggtttcttggttactgcaa 29375178  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  29375177 tttctccaaaatggacatgtattttgaaacggagg 29375143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 43750276 - 43750146
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||    
T  43750276 aaaatagaatgaaataataaatggttaagtgtattatagaaaacacacatataatttcatcaaaaataacaaaatttatttggtttcttggttactccaa 43750177  T
Q  119 tttctccaaaatagacatgtattttgaaacg 149  Q
    |||||||||||| ||||||||||||||||||    
T  43750176 tttctccaaaatggacatgtattttgaaacg 43750146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 13702890 - 13702762
Alignment:
Q  39 aaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacat 136  Q
    ||||| |||| |||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  13702890 aaatggttaaaggtattatagaaaacaaacatataatttcatcaaaaatatcaaaatttatttggtttcttggttactgcaatttctccaaaataggcat 13702791  T
Q  137 gtattttgaaacgga-ggagtatattttt 164  Q
    ||||||| ||| ||| ||||||| |||||    
T  13702790 gtattttaaaatggatggagtatcttttt 13702762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 32835138 - 32835226
Alignment:
Q  63 acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  32835138 acacacataatttcatcaaaaataacaaaatttatttgttttcttggttattgcaatttctccaaaatggacatgtattttgaaacgga 32835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 27707363 - 27707436
Alignment:
Q  80 aaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  27707363 aaaaataacaaaatttatttggtttcttggttactgcaatttctccaaaatggacatgtatttcgaaacggagg 27707436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 44277455 - 44277503
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44277455 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagg 44277503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 48820444 - 48820512
Alignment:
Q  73 tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtatt 141  Q
    |||||||||||||||||||||||||||||||| |||| ||  | ||||||||||||||| |||||||||    
T  48820444 tttcatcaaaaataacaaaatttatttggtttattggataccgtaatttctccaaaataaacatgtatt 48820512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 19897067 - 19897152
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttct 106  Q
    |||| |||||||||||||| || ||||||||||||||  |||||||| | | |||||| ||||||||||||||||||||| |||||    
T  19897067 aatagaatgaaataataaaagagtaagggtattatagaaaaaacacaaagaatttcataaaaaataacaaaatttatttgatttct 19897152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 37293539 - 37293442
Alignment:
Q  56 atagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||| | ||||||||||||| |||| ||||||||| || ||||||  ||| ||||||| |||||| |||| ||||| |||||||||||    
T  37293539 atagaaaaaacacagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaaatggacaagtattgtgaaacggagg 37293442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 12094635 - 12094587
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  12094635 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 12094587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 44522567 - 44522491
Alignment:
Q  32 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||||||||||| ||||  ||||||||||||| ||||||  |||||| |||||||| |||||||||||| |||||||    
T  44522567 aaataataaatggttaaaagtattatagaaaaaacacatgatttcataaaaaataataaaatttatttgatttcttg 44522491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 37781069 - 37780996
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttattt 99  Q
    |||||||||||||||| ||||  |||||||||||||  |||||| | ||||||||||||||| |||||||||||    
T  37781069 aatgaaataataaatggttaatagtattatagaaaaaacacacagaatttcatcaaaaataataaaatttattt 37780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 48963223 - 48963152
Alignment:
Q  89 aaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttgaaacgga-ggagtatatt 161  Q
    |||| ||||||| ||| ||||||||  |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48963223 aaaaattatttgatttattggttag--caatttctccaaaatagatatgtattttgaaacggagggagtatatt 48963152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 19911562 - 19911514
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||||    
T  19911562 cttggttactgcaatttctccaaaatgaacatgtattttgaaacggagg 19911514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 27707120 - 27707172
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacaca 67  Q
    ||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||    
T  27707120 gagaaaaaaataaaaagaaataataaatggttaaggatattatagaaaacaca 27707172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 151
Target Start/End: Original strand, 53559750 - 53559880
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtat--tatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    ||||||||||||||||||| |  ||||| |||  || | |||||||| | | |||||||||||||||||| ||||||||| ||||||| |  ||| ||||    
T  53559750 aataaaatgaaataataaacgggtaaggatatcgtaaataaaacacagagaatttcatcaaaaataacaacatttatttgttttcttgatatgtgtaatt 53559849  T
Q  121 tctccaaaatagacatgtattttgaaacgga 151  Q
    ||| |||||   ||| ||||| |||||||||    
T  53559850 tcttcaaaagcaacaagtattgtgaaacgga 53559880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 1455297 - 1455374
Alignment:
Q  32 aaataataaatgattaagggtattatagaa--aacacacatattttcatcaaaaataacaaaatttatttggtttctt 107  Q
    |||||||||||| | ||| | |||||||||  |||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  1455297 aaataataaatggtgaagagaattatagaagaaacacaaataattttatcaaaaataacaaaatttatttgatttctt 1455374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 4235803 - 4235760
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacg 149  Q
    |||||||||||||||||||||||||  ||||||||||||||||||    
T  4235803 cttggttagtgcaatttctccaaaa-cgacatgtattttgaaacg 4235760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 38805298 - 38805250
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||| ||||| |||||||||||| |||||||||    
T  38805298 cttggttactgcaatttctctaaaatggacatgtattttaaaacggagg 38805250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 18356007 - 18356053
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacaca 69  Q
    |||| |||||||| |||||||| |||||||||||||||||| |||||    
T  18356007 aatagaatgaaatgataaatgagtaagggtattatagaaaaaacaca 18356053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 6901696 - 6901655
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaacacaca 69  Q
    ||||||||||||||||| ||||||||||| |||||| |||||    
T  6901696 aatgaaataataaatgagtaagggtattagagaaaaaacaca 6901655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 26105176 - 26105079
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattat-agaaaacac-acatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    ||||| |||||| |||||||||||||||| ||||||||||| | | ||||||| | | |   |||| ||||||||||||||||||||| ||| |||||    
T  26105176 gagaaaaaaatataatgaaataataaatggttaagggtattgtaaaaaaacacaaaaaaaaatcattaaaaataacaaaatttatttgatttattggt 26105079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 4226759 - 4226716
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacg 149  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||    
T  4226759 cttggttactgcaatttctccaaaa-cgacatgtattttgaaacg 4226716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 19912174 - 19912210
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  19912174 aatttctctaaaatggacatgtattttgaaacggagg 19912210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 38806341 - 38806377
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  38806341 aatttctctaaaatggacatgtattttgaaacggagg 38806377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 7761438 - 7761306
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7761438 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttagtttcttggttagtgcaatt 7761339  T
Q  121 tctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||| ||||||||||||||||||||||    
T  7761338 tctccaaaatggacatgtattttgaaacggagg 7761306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 29260337 - 29260197
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29260337 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 29260238  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  29260237 gtgcaatttctccaaaatggacatgtattttgaaacggagg 29260197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 1605718 - 1605584
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605718 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 1605619  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  1605618 tttctccaaaatggacatgtattttgaaacggagg 1605584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 30734615 - 30734753
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30734615 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 30734714  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  30734715 gtgcaatttctccaaaatggacatgtattttgaaacgga 30734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 8626627 - 8626487
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  8626627 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 8626528  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     |||||||||| |||||| ||||||||||||||||||||||    
T  8626527 atgcaatttcttcaaaatggacatgtattttgaaacggagg 8626487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 13757347 - 13757214
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13757347 aaaataaaatgaaataataattgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgtaa 13757248  T
Q  119 tttctccaaaatagacatgtattttgaaacggag 152  Q
    |||||||||||| |||||||||||||||||||||    
T  13757247 tttctccaaaatggacatgtattttgaaacggag 13757214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 31559874 - 31559998
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  31559874 aaaaaaaaatgaaataataaatgattaagggtattacagaaaacatacacatattttcatcaaaaataacaaaatttatttgattttttggttaatgcaa 31559973  T
Q  119 tttctccaaaatagacatgtatttt 143  Q
    |||||||||||| ||||||||||||    
T  31559974 tttctccaaaatggacatgtatttt 31559998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 15064832 - 15064966
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| ||||||||| |||| |||||||||| ||  |||||||||||||||||||||||||||||||||||||||  |||||    
T  15064832 aaaatataatcaaataataaatggttaagggtagtataaaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttggttgctgcaa 15064931  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||| ||||| ||||||||||||||||||||||    
T  15064932 tttctctaaaatggacatgtattttgaaacggagg 15064966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 30734772 - 30734879
Alignment:
Q  45 ttaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttg 144  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || |||| |||||||||| |||||| |||||||||||||    
T  30734772 ttaagggtattatagaaaacacacataatttcatcaaaaataacaaaatttatttgatttttttgttactgcaatttcttcaaaatggacatgtattttg 30734871  T
Q  145 aaacggag 152  Q
    ||||||||    
T  30734872 aaacggag 30734879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 17942590 - 17942452
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatt--tatttggtttcttggt 110  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| |||||  ||||| ||||||||||||||| ||||    ||||||||||||||||    
T  17942590 gagaaaaaaataaaatgaaataataaatggttaagggtattatagagaacacgcacataatttcatcaaaaataaaaaaaaaaatatttggtttcttggt 17942491  T
Q  111 tagtgcaatttctccaaaatagacatgtattttgaaacg 149  Q
    || ||||||||||| ||||| ||||||||||||||||||    
T  17942490 tactgcaatttctcaaaaatggacatgtattttgaaacg 17942452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 8235763 - 8235639
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||  | |||| |||||||||||| ||||||| |||||||||||| |||||    
T  8235763 aaaatagaatgaaataataaatgattaagggtattatagaaaacacacacataatatcataaaaaataacaaattttatttcgtttcttggttactgcaa 8235664  T
Q  119 tttctccaaaatagacatgtatttt 143  Q
    ||||| ||||||  |||||||||||    
T  8235663 tttcttcaaaatgtacatgtatttt 8235639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 4129572 - 4129440
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||        |||||||    
T  4129572 gagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttat--------ttggtta 4129481  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||| | || |||||||||||||||||||    
T  4129480 ctgcaatttctccaaagtggatatgtattttgaaacggagg 4129440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 21277574 - 21277659
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa-cacacatattttcatcaaaaataacaaaatttatttggtttctt 107  Q
    |||| |||||| || ||||| |||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||| ||||||    
T  21277574 aatagaatgaagtactaaataattaagggtattatagaaaaacacataaattttcataaaaaataacaaaatttatttgatttctt 21277659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 19996715 - 19996763
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19996715 cttggttactgcaatttctccaaaatagacatgtattttgaaacggagg 19996763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 14287125 - 14287038
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaaca-cacatattttcatcaaaaataacaaaatttatttggtttcttgg 109  Q
    ||||||||||||||||||| |  |||||||||||||||||| | |||| | |||||| ||||||||||||||||||||| ||| ||||    
T  14287125 aataaaatgaaataataaaggggtaagggtattatagaaaaaagcacagaatttcataaaaaataacaaaatttatttgatttattgg 14287038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 33845449 - 33845502
Alignment:
Q  47 aagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttg 100  Q
    ||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||    
T  33845449 aagggtactatagaaaaaatacataatttcatcaaaaataacaaaatttatttg 33845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 3798233 - 3798151
Alignment:
Q  30 tgaaataataaatgattaagggtattatagaaaacacacatatt--ttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    ||||||||||||||  ||||||| |||||||||| ||||| ||   ||||| ||||||||||||||||||||| ||| |||||    
T  3798233 tgaaataataaatgtgtaagggtgttatagaaaaaacacaaataacttcatgaaaaataacaaaatttatttgattttttggt 3798151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 11370630 - 11370711
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaacacacat--attttcatcaaaaataacaaaatttatttggtttctt 107  Q
    |||| ||||||||||| ||||| |||||||| |||| |||||   | | |||||||||||||||||||||||||| ||||||    
T  11370630 aatggaataataaatggttaagagtattataaaaaaaacacaatgaatatcatcaaaaataacaaaatttatttgatttctt 11370711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 26860902 - 26860819
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||| ||| |||||||||||| ||||||||  ||||||| | ||||| | ||||||||||||||| |||| ||||||| |||||||    
T  26860902 aatagaataaaataataaatggttaagggt--tatagaataaacacaaaatttcatcaaaaataaaaaaagttatttgatttcttg 26860819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 19996363 - 19996327
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  19996363 aatttctctaaaatggacatgtattttgaaacggagg 19996327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 30235447 - 30235487
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa 63  Q
    |||| |||||||||||||||||||||| ||| |||||||||    
T  30235447 aatagaatgaaataataaatgattaagagtaatatagaaaa 30235487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 31 - 179
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  31 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 130  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggag-gagtatat 160  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  131 gtgcaatttctccaaaatggacatgtattttgaaacggagagagtatat 179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 27813956 - 27813816
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacaca--catattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27813956 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacatacatattttcatcaaaaataacaaaatttatttggtttcttggtta 27813857  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  27813856 gtgcaatttctccaaaatggacatgtattttgaaacggagg 27813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 10981647 - 10981513
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10981647 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 10981548  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  10981547 tttctccaaaatggacatgtattttgaaacggagg 10981513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 36453256 - 36453396
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36453256 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaaaacacacatattttcatcaaaaataataaaatttatttggtttcttggtta 36453355  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  36453356 gtgcaatttctccaaaatggacatgtattttgaaacggagg 36453396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 25614485 - 25614621
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25614485 gagaaaaaaataaaatgaaataataaatgattaagggtatttcagaaaacacacatattttcatcaaaaataacaaaatttatttggttttttggttagt 25614584  T
Q  115 gcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||||||| ||||||||||||||||||||    
T  25614585 gcaatttctccaaaatggacatgtattttgaaacgga 25614621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 47110588 - 47110456
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47110588 aaaataaaataaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttattttgtttcttggttagtgcaatt 47110489  T
Q  121 tctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||| |||||||||||||||| |||||    
T  47110488 tctccaaaatggacatgtattttgaaatggagg 47110456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 40349099 - 40348967
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40349099 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaa 40349000  T
Q  119 tttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||| ||||||||||||||||||||    
T  40348999 tttctccaaaatggacatgtattttgaaacgga 40348967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 16360511 - 16360442
Alignment:
Q  31 gaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttg 100  Q
    ||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  16360511 gaaataataaatggttaagggtattatagaaaaaacacagaatttcatcaaaaataacaaaatttatttg 16360442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 16662231 - 16662146
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||| ||| |||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||  |||||||    
T  16662231 aatataataaaataataaatggttaagggtattataaaaaaaacacaaattttcatcaaaaataacaaaatttattttatttcttg 16662146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 17636591 - 17636506
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||| ||| |||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||  |||||||    
T  17636591 aatataataaaataataaatggttaagggtattataaaaaaaacacaaattttcatcaaaaataacaaaatttattttatttcttg 17636506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 7743542 - 7743625
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||| | |||||||    
T  7743542 aatgaaataataaataattaacggtattatagaaagaaacacataatttcatcaaaaataacaaaatttatttgatatcttggt 7743625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 3091649 - 3091565
Alignment:
Q  28 aatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||||||||||||||| |||||||||||||||  |||||||| | | |||||||||||||||||||||||||||| ||| |||||    
T  3091649 aatgaaataataaatggttaagggtattatagaaaaaacacaaagaatttcatcaaaaataacaaaatttatttgattttttggt 3091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 37983289 - 37983206
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||| |||||||||||||||| |||| ||||||||| |||||| | |   |||||||||||||||||||||||||||| |||||||    
T  37983289 aatataatgaaataataaatggttaaaggtattataaaaaacataaaa--tttcatcaaaaataacaaaatttatttgatttcttg 37983206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 25060133 - 25060181
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  25060133 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 25060181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 27942177 - 27942256
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatt 98  Q
    |||||| |||||||||||||||| |||| ||||||||||  |||||||||||| | |||| |||||||| ||||||||||    
T  27942177 aaaatagaatgaaataataaatggttaaaggtattatagaaaaaacacacataatctcattaaaaataaaaaaatttatt 27942256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 2911548 - 2911596
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  2911548 cttggttactgcaatttctccaaaatggacatgtattttgaaatggagg 2911596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 3498892 - 3498973
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttg 100  Q
    ||||||||||||||||||||||| ||||  ||||||||||||| | ||| |   |||||| ||||||||||||||| |||||    
T  3498892 aaaataaaatgaaataataaatggttaaaagtattatagaaaagatacaaaaaatttcataaaaaataacaaaattaatttg 3498973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 27021624 - 27021566
Alignment:
Q  34 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaa 92  Q
    ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||    
T  27021624 ataataaataattaaggttattatagaaaaaagacatagtttcatcaaaagtaacaaaa 27021566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 2910900 - 2910851
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacgga-ggagtatattttta 165  Q
    |||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  2910900 aatttctttaaaatagacatgtattttgaaacggagggagtatattttta 2910851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 28200335 - 28200298
Alignment:
Q  32 aaataataaatgattaagggtattatagaaaacacaca 69  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28200335 aaataataaatgattaaggatattatagaaaaaacaca 28200298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 23045411 - 23045551
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  23045411 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 23045510  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  23045511 gtgcaatttctccaaaatggacatgtattttgaaacggagg 23045551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 47037984 - 47038120
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  47037984 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttgatttcttagttagt 47038083  T
Q  115 gcaatttctccaaaatagacatgtattttgaaacgga 151  Q
     ||||||||||||||| ||||||||||||||||||||    
T  47038084 acaatttctccaaaatggacatgtattttgaaacgga 47038120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 284468 - 284338
Alignment:
Q  25 taaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  284468 taaaatgaaataataaatgattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttc 284369  T
Q  123 tccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||||||||    
T  284368 tccaaaatggacatgtattttgaaacggagg 284338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 40783789 - 40783929
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  40783789 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggtta 40783888  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  40783889 gtgcaatttctccaaaatgaacatgtattttgaaacggagg 40783929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 321765 - 321618
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  321765 aaaataaaatgaaataataaatgattaaggatattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 321666  T
Q  119 tttctccaaaatagacatgtattttgaaacgga-ggagtatattttta 165  Q
    ||||||||||||  ||||||||||||||||||| |||||| |||||||    
T  321665 tttctccaaaatgaacatgtattttgaaacggagggagtaaattttta 321618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 24772043 - 24772177
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24772043 aaaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 24772142  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||| |||||| ||||||||||||||||||||||    
T  24772143 tttcttcaaaatggacatgtattttgaaacggagg 24772177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 27211102 - 27211236
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||    
T  27211102 aaaatagaataaaataataaatggttaagggtattatagaaaacacacatataatttcctcaaaaataacaaaatttatttggtttcttggttattgcaa 27211201  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  27211202 tttctccaaaatggacatgtattttgaaacggagg 27211236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 23526379 - 23526237
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||| ||| |||||    
T  23526379 aaaatagaatgaaataataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttggtttcttgattactgcaa 23526280  T
Q  119 tttctccaaaatagacatgtattttgaaacgg-aggagtatat 160  Q
    ||||||||||||  ||||||||||||||| || ||||||||||    
T  23526279 tttctccaaaatgaacatgtattttgaaatggaaggagtatat 23526237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 46771776 - 46771644
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||  ||||||||||| |||||    
T  46771776 aaaatagaatgaaaaaataaatggttaagggtattatagaaaacacacacataatttcatcaaaaataacaaaatttatttaatttcttggttactgcaa 46771677  T
Q  119 tttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||| ||||||||||||||||||||    
T  46771676 tttctccaaaatggacatgtattttgaaacgga 46771644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 33082884 - 33082765
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  33082884 aaaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttgatttcttggttagtgcaa 33082785  T
Q  119 tttctccaaaatagacatgt 138  Q
    ||||||||||||||||||||    
T  33082784 tttctccaaaatagacatgt 33082765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 52037260 - 52037382
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||| || |||||||    
T  52037260 aaaatagaatgaaataataaatggttaagagtattatagaaaacacacataattttatcaaaaataataaaatttatttggttttttggataatgcaatt 52037359  T
Q  121 tctccaaaatagacatgtatttt 143  Q
    |||| ||||| ||||||||||||    
T  52037360 tctctaaaatggacatgtatttt 52037382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 1837978 - 1838053
Alignment:
Q  32 aaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttctt 107  Q
    ||||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  1837978 aaataataaatgggtaagggtattatagaaaaaacacataatttcatcaaaaataacaaaatttatttgatttctt 1838053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 1749446 - 1749357
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||||| ||| |||||||||||| |||| | |||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  1749446 aaaatagaataaaataataaatggttaatgctattatagaaaacacacatataatttcatcaaaaataacaaaatttatttgatttcttg 1749357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 52478103 - 52478016
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| |||||||| ||||||  |||||| |||||||||||| ||||| | |||||||||||||||||||||||||||| |||||||||    
T  52478103 aatagaatgaaatgataaatttttaaggttattatagaaaaaacacaaaatttcatcaaaaataacaaaatttatttgatttcttggt 52478016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 7765154 - 7765072
Alignment:
Q  19 agaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttattt 99  Q
    |||||| ||||| |||||||||||| ||| ||||||||  ||||||||||||||  ||||| |||||||||||||||||||||    
T  7765154 agaaaaaaaaattaaataataaatggttatgggtattacggaaaacacacatataatttcaccaaaaataacaaaatttattt 7765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 34458863 - 34458950
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| ||||||||||||||| | ||||| |||||||||||| ||||| | |||||| |||||||  |||||||||||| |||||||||    
T  34458863 aatagaatgaaataataaattagtaaggttattatagaaaaaacacagaatttcataaaaaatagaaaaatttatttgatttcttggt 34458950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 3943113 - 3943065
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  3943113 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 3943065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 9588723 - 9588675
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  9588723 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 9588675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 41959131 - 41959083
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  41959131 cttggttattgcaatttctccaaaatggacatgtattttgaaacggagg 41959083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 51064893 - 51065028
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattat-----agaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgca 117  Q
    |||| |||||||||||||| || ||||||||||||     | |||||||| | | ||||||||||||| |||| ||||||||| || ||||||  ||| |    
T  51064893 aatataatgaaataataaacgagtaagggtattattatagaaaaaacacaaagaatttcatcaaaaatgacaacatttatttgattccttggtatgtgta 51064992  T
Q  118 atttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||  ||||| |||| ||||| |||||||||||    
T  51064993 atttctttaaaatggacaagtattgtgaaacggagg 51065028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 13984991 - 13985037
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  13984991 cttggttactgcaatttctccaaaatggacatgtattttgaaacgga 13985037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 27143151 - 27143239
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaaca---cacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||| ||||||||||||||||||||||  |||||||||||| |   |||  | |||| ||||||||||||||||||||||| |||||||    
T  27143151 aatagaatgaaataataaatgattaagaatattatagaaaaaaactcacggaatttcctcaaaaataacaaaatttatttgatttcttg 27143239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 31003926 - 31004012
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| ||| |||||||||||| |||||||||||||||  |||| ||||||| |||||| ||||||   |||||||||||| |||||||||    
T  31003926 aatagaattaaataataaatggttaagggtattatagaaaaaatacacatactttcattaaaaat---aaaatttatttgatttcttggt 31004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 40261419 - 40261501
Alignment:
Q  31 gaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    ||||||||||||| |||| | ||||||||||||   |||||  | ||||||||||| |||||||||||||||| |||||||||    
T  40261419 gaaataataaatggttaatgatattatagaaaaaaacacacgcaatttcatcaaaattaacaaaatttatttgatttcttggt 40261501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 40562733 - 40562797
Alignment:
Q  35 taataaatgattaagggtattatagaaaacacacatat-tttcatcaaaaataacaaaatttatt 98  Q
    ||||||||| |||| |||||||||||||||||| ||||  || ||||||||||||||||||||||    
T  40562733 taataaatggttaatggtattatagaaaacacatatataatttatcaaaaataacaaaatttatt 40562797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 3657199 - 3657125
Alignment:
Q  38 taaatgattaagggtattatagaaaacaca--catattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||||| |||||| |||||||||||| |||  || | |||||| ||||||||||||||||||||| |||||||||    
T  3657199 taaatggttaaggttattatagaaaaaacatacaaaatttcattaaaaataacaaaatttatttgatttcttggt 3657125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 18396832 - 18396754
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttattt 99  Q
    |||| ||||||||||| |||| ||||   ||||||||||||  |||||||| |||||| ||||||||||||||||||||    
T  18396832 aatagaatgaaataatgaatggttaaatatattatagaaaaaccacacataatttcataaaaaataacaaaatttattt 18396754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 9589631 - 9589667
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9589631 aatttctctaaaatagacatgtattttgaaacggagg 9589667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 25929241 - 25929173
Alignment:
Q  31 gaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttattt 99  Q
    ||||||||||||| |||||| |||  ||||||| ||||| | ||| ||||||| |||||||||||||||    
T  25929241 gaaataataaatggttaaggatatcgtagaaaaaacacagaatttaatcaaaattaacaaaatttattt 25929173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 40564241 - 40564293
Alignment:
Q  92 atttatttggtttcttggttagtgcaatttctccaaaatagacatgtattttg 144  Q
    ||||||||||||||||||||| ||| |||| |||||||| ||||| |||||||    
T  40564241 atttatttggtttcttggttactgcgatttttccaaaatggacatatattttg 40564293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 44227889 - 44227853
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44227889 aatttctccaaaatggacatgtattttgaaacggagg 44227853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 44228228 - 44228276
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||  |||||||||||||||| |||||||||||||||| |||||    
T  44228228 cttggttacagcaatttctccaaaatggacatgtattttgaaatggagg 44228276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 14351954 - 14351989
Alignment:
Q  75 tcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||||||||||||||||||||||||| |||||||||    
T  14351954 tcatcaaaaataacaaaatttatttgttttcttggt 14351989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 24876699 - 24876633
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaa 90  Q
    |||| |||||||| ||||||| | || |||||||||||||| ||||||| | ||||||||||||||||    
T  24876699 aatagaatgaaatgataaatggtcaaaggtattatagaaaa-acacataatatcatcaaaaataacaa 24876633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 31061594 - 31061662
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaa 90  Q
    |||| |||||||||||||||| ||| ||||||||| |||||  |||||||| |||||| |||||||||||    
T  31061594 aatataatgaaataataaatggtta-gggtattatggaaaaaacacacataatttcataaaaaataacaa 31061662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 1168414 - 1168369
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacgg 150  Q
    |||||||| |||||||||| |||||  |||||||||||||||||||    
T  1168414 cttggttactgcaatttcttcaaaaacgacatgtattttgaaacgg 1168369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 21623680 - 21623756
Alignment:
Q  34 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggtt 111  Q
    |||||||||  |||||||||||| |||||| | ||| | ||||||||||| |||||||||||||  | ||||||||||    
T  21623680 ataataaatatttaagggtattaaagaaaa-agacacactttcatcaaaagtaacaaaatttatcggttttcttggtt 21623756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 3943763 - 3943799
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  3943763 aatttctctaaaatggacatgtattttgaaacggagg 3943799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 41959809 - 41959845
Alignment:
Q  117 aatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  41959809 aatttctctaaaatggacatgtattttgaaacggagg 41959845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 24706379 - 24706517
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  24706379 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 24706478  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  24706479 gtgcaatttctccaaaatggacatgtattttgaaacgga 24706517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 25704790 - 25704656
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704790 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 25704691  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  25704690 tttctccaaaatggacatgtattttgaaacggagg 25704656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 21310564 - 21310430
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310564 aaaaaaaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 21310465  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  21310464 tttctccaaaatggacatgtattttgaaacggagg 21310430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 14261189 - 14261049
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  14261189 gagaaaaaaataaaatgaaataataaattattaagggtattatagaaaacacacacatatttttatcaaaaataacaaaatttatttggtttcttggtta 14261090  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  14261089 gtgcaatttctccaaaatggacatgtattttgaaacggagg 14261049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 22321405 - 22321537
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22321405 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggttagtgcaa 22321504  T
Q  119 tttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||| ||||||||||||||||||||    
T  22321505 tttctccaaaatggacatgtattttgaaacgga 22321537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 12071700 - 12071566
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  12071700 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttagtttattggttagtgcaa 12071601  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  12071600 tttctccaaaatggacatgtattttgaaacggagg 12071566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 40122617 - 40122757
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  40122617 gagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggttttttggtta 40122716  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||||| ||||||||||||||||||||||    
T  40122717 ctgcaatttctccaaaatggacatgtattttgaaacggagg 40122757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 34324720 - 34324855
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaattta-tttggtttcttggttagtgca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  34324720 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttaatttagtttcttggttagtgca 34324819  T
Q  118 atttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34324820 atttctccaaaatggacatgtattttgaaacggagg 34324855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 44568982 - 44568844
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||    
T  44568982 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggttttttggtta 44568883  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  44568882 gtgcaatttcttcaaaatggacatgtattttgaaacgga 44568844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 21661667 - 21661807
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||    
T  21661667 gagaaaaaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataataaaatttatttggtttcttggtta 21661766  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||||| |||||||||||||||| |||||    
T  21661767 ctgcaatttctccaaaatggacatgtattttgaaagggagg 21661807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 21670431 - 21670571
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||    
T  21670431 gagaaaaaaataaaatgaaataataaatggttaaaggtattatagaaaacacacacatattttcatcaaaaataaaaaaatttatttggtttcttggtta 21670530  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||||| |||||||||||||||| |||||    
T  21670531 ctgcaatttctccaaaatggacatgtattttgaaagggagg 21670571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 50768009 - 50767871
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  50768009 gagaaaaaaataaaatgaaataataaattattaagggtattatagaaaacacacatatattttcatcaaaaataacaaaatttatttggtttcttgatta 50767910  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacgga 151  Q
    |||||||||||| |||||  | |||||||||||||||||    
T  50767909 gtgcaatttctctaaaatgaatatgtattttgaaacgga 50767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 20249151 - 20249283
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaa-acacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaat 119  Q
    |||||| ||| |||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||    
T  20249151 aaaatagaataaaataataaatggttaagggtattatagaaacacacacataatttcttcaaaaataacaaaatttatttggtttcttggttaatacaat 20249250  T
Q  120 ttctccaaaatagacatgtattttgaaacggag 152  Q
    || |||||||| |||||||||||||||||||||    
T  20249251 ttatccaaaatggacatgtattttgaaacggag 20249283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 31892373 - 31892243
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||||| |||||||||||||||| | || ||||||||||||||||||  || ||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  31892373 aaaatagaatgaaataataaatggtcaaaggtattatagaaaacaca--taatttcatcaaaaataataaaatttatttgatttcttggttactgcaatt 31892276  T
Q  121 tctccaaaatagacatgtattttgaaacggagg 153  Q
    |||  |||||  ||||||||||||| |||||||    
T  31892275 tctttaaaatgaacatgtattttgatacggagg 31892243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 1988150 - 1988046
Alignment:
Q  45 ttaagggtattatagaaaacaca--catattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaatagacatgtattt 142  Q
    |||||||||||||||||||||||  |||| ||||||||||||||| |||||||||||| |||||| |||| |||||||||||| |||||||||| |||||    
T  1988150 ttaagggtattatagaaaacacatacataatttcatcaaaaataataaaatttatttgatttcttagttactgcaatttctcc-aaatagacatatattt 1988052  T
Q  143 tgaaac 148  Q
    | ||||    
T  1988051 taaaac 1988046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 32543617 - 32543532
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattat-agaaaacacacatattttcatcaaaaataacaaaatttatttggtttctt 107  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| | | ||||||||||| |||||||| ||||||||||||||    
T  32543617 aataaaatgaaataataaatgattaagggtattataaaaaaacacaaagaatttcatcaaaattaacaaaaattatttggtttctt 32543532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 20714488 - 20714577
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa---cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| |||||||||||||||| |||||| ||||||||||||   |||||||| |||||||||||||||||||||||||||| ||| |||||    
T  20714488 aatataatgaaataataaatggttaagg-tattatagaaaaacacacacatagtttcatcaaaaataacaaaatttatttgatttattggt 20714577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 26676714 - 26676837
Alignment:
Q  31 gaaataataaatgattaagggtattatagaaaacacac--atattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaa 128  Q
    |||||||||||||| |||||||||||||||||| ||||  | | |||||| |||||| |||| ||||||||| || ||||||  ||| ||||||| ||||    
T  26676714 gaaataataaatgagtaagggtattatagaaaaaacacgaagaatttcataaaaaatgacaacatttatttgattccttggtatgtgtaatttcttcaaa 26676813  T
Q  129 atagacatgtattttgaaacggag 152  Q
    || || | ||||| ||||||||||    
T  26676814 atggataagtattgtgaaacggag 26676837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 6129093 - 6129175
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||||||||||||||||||||||||||| ||||||| | ||| |   ||| |||||||||||||||||||||||| |||||||    
T  6129093 aatgaaataataaatgattaagggtattgtagaaaaaatacaaagaattttatcaaaaataacaaaatttatttgatttcttg 6129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 21064899 - 21064834
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaata 86  Q
    |||||| |||||||||||||||  ||||| |||||||| |||||||||||| ||||||||||||||    
T  21064899 aaaatagaatgaaataataaatagttaagagtattataaaaaacacacataatttcatcaaaaata 21064834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 19692860 - 19692771
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| ||||||||||||||||| ||||| ||||||||  |||||||| | | |||||| |||||| |||| ||||||||| |||||||||    
T  19692860 aatagaatgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggt 19692771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 19703445 - 19703356
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| ||||||||||||||||| ||||| ||||||||  |||||||| | | |||||| |||||| |||| ||||||||| |||||||||    
T  19703445 aatagaatgaaataataaatgagtaaggatattatagaaaaaacacaaagaatttcataaaaaatgacaacatttatttgatttcttggt 19703356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 48652356 - 48652268
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaac-acacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| ||||||||||||||||| |||  || ||| ||||||  ||| | | |||||||||||||||||||||||||||| |||||||||    
T  48652356 aatataatgaaataataaatgagtaaatgtgttaaagaaaaatacaaagaatttcatcaaaaataacaaaatttatttgatttcttggt 48652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 34284171 - 34284234
Alignment:
Q  37 ataaatgattaagggtattatag--aaaacacacatattttcatcaaaaataacaaaatttatt 98  Q
    |||||| ||||||||||||||||  |||| ||| ||| ||||||||||| ||||||||||||||    
T  34284171 ataaataattaagggtattatagaaaaaatacaaatagtttcatcaaaagtaacaaaatttatt 34284234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 19361700 - 19361662
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtatttt 143  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  19361700 cttggttactgcaatttctccaaaatggacatgtatttt 19361662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 51777755 - 51777687
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaa 92  Q
    ||||| ||||||||||||||| ||||| ||||||||||||| ||||| | ||| ||||||| ||| ||||    
T  51777755 aataacatgaaataataaatggttaagagtattatagaaaa-acacagaattttatcaaaattaaaaaaa 51777687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 23366934 - 23366794
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||    
T  23366934 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttatttggtttcttggtta 23366835  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  23366834 gtgcaatttctccaaaatggacatgtattttgaaacggagg 23366794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 39938315 - 39938175
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  39938315 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 39938216  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  39938215 gtgcaatttctccaaaatggtcatgtattttgaaacggagg 39938175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 3519047 - 3518913
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3519047 aaaataaaatgaaataataaattattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 3518948  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  3518947 tttctccaaaatggacatgtattttgaaacggagg 3518913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 1102648 - 1102508
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacaca--tattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1102648 gagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttggtttcttggtta 1102549  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||||| ||||||||||||||||||||||    
T  1102548 ctgcaatttctccaaaatggacatgtattttgaaacggagg 1102508  T

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Target: chr2; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 1646432 - 1646317
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagt 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |    
T  1646432 gagaaaaaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttagtttcttggttgct 1646333  T
Q  115 gcaatttctccaaaat 130  Q
    ||||||||||||||||    
T  1646332 gcaatttctccaaaat 1646317  T

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Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 12969877 - 12970011
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| ||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12969877 aaaatagaataaaataataaatggttaagggtattatagaaaatatacacataatttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 12969976  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||||||| ||||||||||||||||||||||    
T  12969977 tttctccaaaatggacatgtattttgaaacggagg 12970011  T

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Target: chr2; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 37673887 - 37674009
Alignment:
Q  33 aataataaatgattaagggtattatagaaaacac--acatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatttctccaaaat 130  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37673887 aataataaatgattaagggtattatagaaaacacacacatattttcatcaaaaataacaaaatttatttgatttcttggttagtgcaatttctccaaaat 37673986  T
Q  131 agacatgtattttgaaacggagg 153  Q
      |||||||||||||||||||||    
T  37673987 gaacatgtattttgaaacggagg 37674009  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 22388273 - 22388335
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaa--acacacatattttcatcaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22388273 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacacatattttcatcaa 22388335  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 34224378 - 34224426
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  34224378 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 34224426  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 39562037 - 39562104
Alignment:
Q  33 aataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttg 100  Q
    ||||||||||| |||||||||||| | |||||| | ||| |||| |||||||||||||||||||||||    
T  39562037 aataataaatggttaagggtattagaaaaaacaaaaataatttcttcaaaaataacaaaatttatttg 39562104  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 14779914 - 14779838
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatat--tttcatcaaaaataacaaaatttattt 99  Q
    |||| ||||||||||||||||| ||||  |||||||||||| ||||| ||  ||||||||||||||| |||||||||||    
T  14779914 aatataatgaaataataaatgagtaag--tattatagaaaaaacacaaataatttcatcaaaaataaaaaaatttattt 14779838  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 19976468 - 19976380
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaaca-cacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| ||| |||||||||||   |||||||||||||||||| | |||||| ||| ||||||| || ||||||||||||| |||||||||    
T  19976468 aatataataaaataataaataggtaagggtattatagaaaaaaacacataattttatcaaaagtaccaaaatttatttgatttcttggt 19976380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 35179097 - 35179164
Alignment:
Q  45 ttaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||||| ||||||||||||  |||||| | |||||||||||||||||||||||||||  |||||||||    
T  35179097 ttaaggttattatagaaaaaacacacaaaatttcatcaaaaataacaaaatttatttcatttcttggt 35179164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 34242107 - 34242040
Alignment:
Q  28 aatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaattt 95  Q
    ||||||||||||||||  ||||||| ||| | |||| ||||| | |||||||||||||||||||||||    
T  34242107 aatgaaataataaatgggtaagggtgttacaaaaaaaacacagaatttcatcaaaaataacaaaattt 34242040  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 18078193 - 18078104
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggt 110  Q
    |||| |||||| ||||||||| | ||| |||||||||||||  |||| | |  ||||||||||||||||||||||||||| ||| |||||    
T  18078193 aatagaatgaattaataaatggtcaagagtattatagaaaatccacaaaaaaattcatcaaaaataacaaaatttatttgattttttggt 18078104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 32840312 - 32840401
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaa-----acacacatattttcatcaaaaataacaaaatttatttggtttctt 107  Q
    |||| |||||||||||||||   ||| |||||||||||||     | ||||| | |||||||||||||||||||||||||||| ||||||    
T  32840312 aatagaatgaaataataaatcgataatggtattatagaaagaaaaaaacacagaatttcatcaaaaataacaaaatttatttgatttctt 32840401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 1002870 - 1002997
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacat--attttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||| ||||||||||||||||| ||| | |||| | ||||| ||| |   | ||||||||||||||| |||||||||||| |||||| ||  ||| |||     
T  1002870 aatagaatgaaataataaatgagtaatgttattgtcgaaaaaacaaaaggaatttcatcaaaaataataaaatttatttgatttcttagtatgtgtaata 1002969  T
Q  121 tctccaaaatagacatgtattttgaaac 148  Q
    ||  |||||  |||||||||||||||||    
T  1002970 tcctcaaaagcgacatgtattttgaaac 1002997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 4917899 - 4917839
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaa 83  Q
    |||| ||||||||||||||| ||||||  |||||||||||| ||||||| ||| |||||||    
T  4917899 aatagaatgaaataataaataattaagattattatagaaaaaacacataattttatcaaaa 4917839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 14117753 - 14117814
Alignment:
Q  34 ataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaattt 95  Q
    |||||||||  ||||| ||||||||| ||| | ||||| ||||||||||| |||||||||||    
T  14117753 ataataaatacttaagagtattataggaaaaagacataatttcatcaaaagtaacaaaattt 14117814  T

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Target: scaffold0054 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 45593 - 45459
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaa 118  Q
    |||||| ||| |||||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  45593 aaaatagaataaaataataaatggttaagggtattatagaaaatacacacataatttcatcaaaaataacaaaatttatttggtttcttggttggtgcaa 45494  T
Q  119 tttctccaaaatagacatgtattttgaaacggagg 153  Q
    ||||||||||||  |||||||||||||||||||||    
T  45493 tttctccaaaatgaacatgtattttgaaacggagg 45459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 403 - 525
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatagaaaacacacatattttcatcaaaaataacaaaatttatttggtttcttggttagtgcaatt 120  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||| ||| ||| |||||||    
T  403 aaaatagaatgaaataataaatgattaagggtattataaaaaacacacataattttatcaaaaataacaaaatttatttgattttttgattactgcaatt 502  T
Q  121 tctccaaaatagacatgtatttt 143  Q
    || |||||||  |||||||||||    
T  503 tcgccaaaatgaacatgtatttt 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 307 - 175
Alignment:
Q  15 gagaagaaaataaaatgaaataataaatgattaagggtattatagaaaaca--cacatattttcatcaaaaataacaaaatttatttggtttcttggtta 112  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||        |||||||    
T  307 gagaaaaaaataaaatgaaataataaatggttaagggtattatagaaaacacacacatattttcataaaaaataacaaaatttat--------ttggtta 216  T
Q  113 gtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
     ||||||||||||||| | || |||||||||||||||||||    
T  215 ctgcaatttctccaaagtggatatgtattttgaaacggagg 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 70961 - 70874
Alignment:
Q  23 aataaaatgaaataataaatgattaagggtattatagaaaa--cacacatattttcatcaaaaataacaaaatttatttggtttcttg 108  Q
    |||| |||||||||||||||| |||||||| ||| ||||||  |||||| | |||||||||||||||||||||||||||| |||||||    
T  70961 aatagaatgaaataataaatggttaagggtgttacagaaaaaacacacagaatttcatcaaaaataacaaaatttatttgatttcttg 70874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 23520 - 23472
Alignment:
Q  105 cttggttagtgcaatttctccaaaatagacatgtattttgaaacggagg 153  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  23520 cttggttactgcaatttctccaaaatggacatgtattttgaaacggagg 23472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 65301 - 65375
Alignment:
Q  21 aaaataaaatgaaataataaatgattaagggtattatag---aaaacacacatattttcatcaaaaataacaaaa 92  Q
    |||||| |||||||||||||||| |||||||||||||||   |||||||| ||| ||||||||||||||| ||||    
T  65301 aaaatagaatgaaataataaatggttaagggtattatagaaaaaaacacatataatttcatcaaaaataataaaa 65375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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