View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_high_12 (Length: 303)
Name: NF3697_high_12
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 25528112 - 25527845
Alignment:
| Q |
17 |
aaatacaagtcataattagtatgggtcaaaacaagcaagtcataatgaaaaggaaaaagatacacacttcatcttctcaaactaaactaaacaggtttaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |
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| T |
25528112 |
aaatacaagtcataattagtatgggtcaaaacaagcaagtcataatgaaaataaata-------cacttcatcttctcaaactaaactaaacaggtttaa |
25528020 |
T |
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| Q |
117 |
ttaagaaaggtgttaagacaattctgctgggggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaattagaaagtacga |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25528019 |
ttaagaaaggtgttaagacaattctgctggtggtagtatatataagaagaaagatgttagaagaattcatttcattttcatttcaaaatagaaagtacga |
25527920 |
T |
|
| Q |
217 |
aattttagggtttcaaactcaacaatgtcactctgtcgccacctcctcctccgccgttcctccgccgtcactctc |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25527919 |
aattttagggtttcaaactcaacaatgtcactctttcgccacctcctcctccgccgttcctccgccgtcactctc |
25527845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 25535954 - 25535874
Alignment:
| Q |
214 |
cgaaattttagggtttca---aactcaacaatgtcactctgtcgccacctcctcctccgccgttcctccgccgtcactctc |
291 |
Q |
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|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25535954 |
cgaaatcttagggtttcattcaactcaacaatgtcactcctccgccacctcctcctccgccgttcctccgccgtcactctc |
25535874 |
T |
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