View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3697_high_13 (Length: 302)

Name: NF3697_high_13
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3697_high_13
NF3697_high_13
[»] chr1 (1 HSPs)
chr1 (1-297)||(3922851-3923147)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 3923147 - 3922851
Alignment:
Q  1 tatgagccagtcacagtcattactattggagtttttgataacaatcagttagatcctgaaagtagagccagaggtgcaagagatactataatggctaaga 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3923147 tatgagccattcacagtcattactattggagtttttgataacaatcagttagatcctgaaagtagagccagaggtgcaagagatactataatggctaaga 3923048  T
Q  101 taaggattcgtctatcaacacttgaaaacggcaaagtgtatgcacattcttaccctcttataggtttacatccctctggtgtaactaagatgggtgaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3923047 taaggattcgtctatcaacacttgaaaacggcaaagtgtatgcacattcttaccctcttataggtttacatccctctggtgtaactaagatgggtgaaat 3922948  T
Q  201 ccatttggcagtgaagtttacttggacatctcagtctacatttacttttccatttgagtctatatttaataagtgtgcattatacggcagacctttg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3922947 ccatttggcagtgaagtttacttggacatctcagtctacatttacttttccatttgagtctatatttaataagtgtgcattatacggcagacctttg 3922851  T

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