View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_high_15 (Length: 271)
Name: NF3697_high_15
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 26791531 - 26791784
Alignment:
| Q |
1 |
tgtattcgggtttcatatattaaagttaatgcgattcttgaagaagaagaaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcag |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
26791531 |
tgtattcgggtttcatatattaaagttaaagcgattcttgaagaagaaaaaaa-gtgaagt-accaaacttccagcgagcttgaacgagaccaatctcag |
26791628 |
T |
|
| Q |
101 |
gattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26791629 |
gattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgact |
26791728 |
T |
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| Q |
201 |
atgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaa |
256 |
Q |
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| T |
26791729 |
atgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaa |
26791784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 59 - 256
Target Start/End: Original strand, 26822488 - 26822685
Alignment:
| Q |
59 |
aattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatc |
158 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||| |
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| T |
26822488 |
aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc |
26822587 |
T |
|
| Q |
159 |
agcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaa |
256 |
Q |
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| T |
26822588 |
agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaa |
26822685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 26785811 - 26786044
Alignment:
| Q |
25 |
gttaatgcgattcttgaagaagaag--aaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggat |
122 |
Q |
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|||||||||||||| |||||| || |||| | | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
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| T |
26785811 |
gttaatgcgattctagaagaattagggaaaaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaat |
26785910 |
T |
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| Q |
123 |
ggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagt |
222 |
Q |
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|||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26785911 |
ggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttaga |
26786010 |
T |
|
| Q |
223 |
gcaccagctttgtacccatttctgttgtccctaa |
256 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26786011 |
gcaccagctttgtacccatttctgttgtccctaa |
26786044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 57 - 256
Target Start/End: Original strand, 26832563 - 26832762
Alignment:
| Q |
57 |
gaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaa |
156 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||| ||||||||| |
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| T |
26832563 |
gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa |
26832662 |
T |
|
| Q |
157 |
tcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaa |
256 |
Q |
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|||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||||| |
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| T |
26832663 |
tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaa |
26832762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 41546355 - 41546246
Alignment:
| Q |
145 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttc |
244 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||| |||||||| || || || |||||||||||||| ||||||| |
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| T |
41546355 |
tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
41546256 |
T |
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| Q |
245 |
tgttgtccct |
254 |
Q |
| |
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| || ||||| |
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| T |
41546255 |
tattttccct |
41546246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 256
Target Start/End: Complemental strand, 41917666 - 41917468
Alignment:
| Q |
58 |
aaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaat |
157 |
Q |
| |
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||||||||||| ||||| |||||||||| || ||||| |||||||||| || | ||| || | ||| || | |||||| || || |||||||||| |
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| T |
41917666 |
aaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaat |
41917567 |
T |
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| Q |
158 |
cagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaa |
256 |
Q |
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|||||||||| || ||||||| |||||||| |||| |||||| |||||||| || |||| || || |||||||| |||||||| |||||||||| |
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| T |
41917566 |
cagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaa |
41917468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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