View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_low_11 (Length: 330)
Name: NF3697_low_11
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_low_11 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 75827 - 75516
Alignment:
| Q |
1 |
agaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaatacaaattatatt |
100 |
Q |
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| T |
75827 |
agaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaatacaaattatatt |
75728 |
T |
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| Q |
101 |
tttctaccaaacatttnnnnnnnn-tgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacagaatatgagtgag |
199 |
Q |
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| T |
75727 |
tttctaccaaacatttaaaaaaaaatgcaaaatcaaactcttttgcaagagcccctcttttgagattagaattcttttgtcagaacagaatatgagtgag |
75628 |
T |
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| Q |
200 |
tcacattaactatagatctggcaaagatgaggaatttttatggttttggttggttttcccaaaagatgaggaattctttgtttgggttgattttataaaa |
299 |
Q |
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| T |
75627 |
tcacattaactatagatctggcaaagatgaggaatttttatggttttggttggttttcccaaaagatgaggaattctttgtttgggttgattttataaaa |
75528 |
T |
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| Q |
300 |
gactgaccgatg |
311 |
Q |
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| T |
75527 |
gactgaccgatg |
75516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28484680 - 28484766
Alignment:
| Q |
1 |
agaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
87 |
Q |
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| T |
28484680 |
agaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttgttatcctcaatctagaaagaaaggagtattctaaa |
28484766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29797092 - 29797178
Alignment:
| Q |
1 |
agaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
87 |
Q |
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| T |
29797092 |
agaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttgttatcctcaatctagaaagaaaggagtattctaaa |
29797178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 28500408 - 28500489
Alignment:
| Q |
6 |
agtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
87 |
Q |
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| T |
28500408 |
agtaagaaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa |
28500489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 29715165 - 29715238
Alignment:
| Q |
1 |
agaatagtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaa |
74 |
Q |
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| T |
29715165 |
agaatagtaagaaaatacaaaatgaatgaagtgcagttagtatatccctttattatcgtcaatctagaaagaaa |
29715238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 29812819 - 29812900
Alignment:
| Q |
6 |
agtaacaaaatacaaaagaaataaaatgcagttaataaatccctttcttgtcgttaatctagaaagaaaaaagtattctaaa |
87 |
Q |
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| T |
29812819 |
agtaagaaaatacaaaatgaatgaagtgtagttagtaaatccctttctagtcgtcaatctagaaagagaggagtattctaaa |
29812900 |
T |
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