View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_low_2 (Length: 501)
Name: NF3697_low_2
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 3332627 - 3332144
Alignment:
| Q |
1 |
caccatcaattccacactttacagcagcagcaacaaaccacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332627 |
caccatcaattccacactttacagcagcagcaacaaaccacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgag |
3332528 |
T |
|
| Q |
101 |
aagaaaacagcaacaacaagttcagcacagattttagccccaagttagaatccggaggaggtggttccggtggcgacaccgattcaatgacaagaagacc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332527 |
aagaaaacagcaacaacaagttcagcacagattttagccccaagttagaatccggaggaggtggttccggtggcgacaccgattcaatgacaagaagacc |
3332428 |
T |
|
| Q |
201 |
aagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgccttgaaaactcacgtgatggaagttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332427 |
aagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgccttgaaaactcacgtgatggaagttgca |
3332328 |
T |
|
| Q |
301 |
gacggttgtgacgttgttgaaagtgtcaacaactttgctagacgccgtcaaagaggcgtttgcatcatgagtgggacagggacggttacaaacgtgacac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332327 |
gacggttgtgacgttgttgaaagtgtcaacaacttcgctagacgccgtcaaagaggcgtttgcatcatgagtgggacagggacggttacaaacgtgacac |
3332228 |
T |
|
| Q |
401 |
taaggcaaccggcttctcctggggctgttgttacacttcatggaaggttcgagattctttcgctggctggatcgtttcttccac |
484 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3332227 |
taaggcaaccggcttctcctggagctgttgttacacttcatggaaggttcgagattctttcgctggctggatcgtttcttccac |
3332144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 13212894 - 13212814
Alignment:
| Q |
192 |
aagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcacacgtgacagcgcaaacgc |
272 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||||||||||| || |||||||| | |||||||| ||||| |
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|
| T |
13212894 |
aagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcatcacgagggacagcgcgaacgc |
13212814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32803278 - 32803230
Alignment:
| Q |
194 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
32803230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
194 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
242 |
Q |
| |
|
|||||||||||||||||||| | || || |||||||||||||||||||| |
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|
| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 32809738 - 32809703
Alignment:
| Q |
194 |
gaagaccaagaggaagaccagctggatccaaaaaca |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
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|
| T |
32809738 |
gaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 46200911 - 46200964
Alignment:
| Q |
202 |
agaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcatcaca |
255 |
Q |
| |
|
|||||| | ||| |||| || |||||||||||||||||||| |||||||||||| |
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| T |
46200911 |
agaggacgtccacctggctcaaaaaacaaaccaaaaccacctattatcatcaca |
46200964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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