View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3697_low_20 (Length: 267)

Name: NF3697_low_20
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3697_low_20
NF3697_low_20
[»] chr8 (20 HSPs)
chr8 (96-258)||(38544212-38544374)
chr8 (127-199)||(2320160-2320232)
chr8 (97-142)||(10500953-10500998)
chr8 (50-95)||(28520945-28520990)
chr8 (2-50)||(1893974-1894022)
chr8 (96-136)||(35885336-35885376)
chr8 (2-50)||(38171559-38171607)
chr8 (1-32)||(39320190-39320221)
chr8 (2-36)||(6338298-6338332)
chr8 (96-142)||(10501914-10501960)
chr8 (2-36)||(17081634-17081668)
chr8 (2-36)||(17115518-17115552)
chr8 (2-36)||(23676851-23676885)
chr8 (1-31)||(41694033-41694063)
chr8 (2-36)||(43276910-43276944)
chr8 (1-30)||(27781095-27781124)
chr8 (1-30)||(41313368-41313397)
chr8 (96-136)||(788026-788066)
chr8 (2-50)||(28709273-28709321)
chr8 (2-50)||(28716630-28716678)
[»] chr2 (14 HSPs)
chr2 (152-238)||(20040174-20040258)
chr2 (1-51)||(43507683-43507733)
chr2 (2-50)||(5039739-5039787)
chr2 (2-51)||(13111872-13111921)
chr2 (1-50)||(24402173-24402222)
chr2 (2-38)||(2546453-2546489)
chr2 (2-50)||(40025071-40025119)
chr2 (96-136)||(42946477-42946517)
chr2 (1-36)||(29514819-29514854)
chr2 (2-36)||(4453652-4453686)
chr2 (2-36)||(21865224-21865258)
chr2 (96-142)||(26021913-26021959)
chr2 (5-57)||(15521429-15521481)
chr2 (1-37)||(17263874-17263910)
[»] chr6 (9 HSPs)
chr6 (126-240)||(18246207-18246321)
chr6 (1-50)||(10856106-10856155)
chr6 (1-36)||(34685139-34685174)
chr6 (2-50)||(34903926-34903974)
chr6 (2-33)||(1806447-1806478)
chr6 (96-143)||(3802811-3802858)
chr6 (2-36)||(14227667-14227701)
chr6 (2-36)||(32731739-32731773)
chr6 (1-50)||(558334-558382)
[»] chr4 (24 HSPs)
chr4 (130-247)||(16990496-16990613)
chr4 (1-40)||(36008130-36008169)
chr4 (2-50)||(47417608-47417656)
chr4 (96-142)||(24471830-24471876)
chr4 (1-50)||(4355717-4355766)
chr4 (1-50)||(4939510-4939559)
chr4 (2-51)||(28307217-28307266)
chr4 (1-50)||(31678939-31678988)
chr4 (96-136)||(5825334-5825374)
chr4 (2-50)||(8829948-8829996)
chr4 (9-45)||(33114957-33114993)
chr4 (2-50)||(42116859-42116907)
chr4 (1-32)||(29413519-29413550)
chr4 (91-142)||(35428161-35428212)
chr4 (1-39)||(3009692-3009730)
chr4 (2-36)||(11600660-11600694)
chr4 (2-36)||(25199429-25199463)
chr4 (2-36)||(35777519-35777553)
chr4 (1-30)||(11152064-11152093)
chr4 (1-30)||(23867994-23868023)
chr4 (1-30)||(29663919-29663948)
chr4 (1-30)||(33005253-33005282)
chr4 (93-142)||(52915850-52915899)
chr4 (1-45)||(35467990-35468034)
[»] chr3 (26 HSPs)
chr3 (1-50)||(54542064-54542113)
chr3 (127-247)||(37241984-37242104)
chr3 (1-40)||(52788660-52788699)
chr3 (1-40)||(52794879-52794918)
chr3 (1-50)||(48942965-48943014)
chr3 (127-247)||(1258696-1258816)
chr3 (95-139)||(42147553-42147597)
chr3 (2-52)||(28677027-28677077)
chr3 (96-142)||(42146800-42146845)
chr3 (2-51)||(8872839-8872888)
chr3 (94-142)||(50306525-50306573)
chr3 (1-36)||(39469901-39469936)
chr3 (1-36)||(43740407-43740442)
chr3 (2-36)||(16127276-16127310)
chr3 (2-36)||(19948455-19948489)
chr3 (2-36)||(26540941-26540975)
chr3 (2-36)||(29081418-29081452)
chr3 (2-40)||(37088261-37088299)
chr3 (1-50)||(4240253-4240301)
chr3 (2-47)||(24536826-24536871)
chr3 (1-30)||(37714094-37714123)
chr3 (97-142)||(51492459-51492504)
chr3 (1-50)||(53779005-53779054)
chr3 (1-30)||(55305238-55305267)
chr3 (2-50)||(46248101-46248148)
chr3 (1-33)||(50317158-50317190)
[»] chr7 (12 HSPs)
chr7 (1-45)||(27089788-27089832)
chr7 (1-45)||(27188469-27188513)
chr7 (127-247)||(31234147-31234267)
chr7 (96-142)||(9378729-9378775)
chr7 (1-33)||(35587570-35587602)
chr7 (1-36)||(31511288-31511323)
chr7 (1-36)||(34709221-34709256)
chr7 (2-57)||(43134365-43134420)
chr7 (1-36)||(45222205-45222240)
chr7 (2-36)||(36436135-36436169)
chr7 (2-54)||(10312169-10312221)
chr7 (1-33)||(48832185-48832217)
[»] chr1 (20 HSPs)
chr1 (1-45)||(46369787-46369831)
chr1 (1-50)||(3270636-3270685)
chr1 (1-45)||(50351014-50351058)
chr1 (95-142)||(15373956-15374003)
chr1 (96-139)||(15374702-15374745)
chr1 (2-53)||(36838812-36838863)
chr1 (96-142)||(46358611-46358657)
chr1 (97-142)||(4124701-4124746)
chr1 (2-51)||(30721741-30721790)
chr1 (2-50)||(7711071-7711119)
chr1 (95-142)||(3788434-3788481)
chr1 (2-53)||(33524495-33524546)
chr1 (96-142)||(4125419-4125465)
chr1 (96-142)||(5101853-5101899)
chr1 (2-36)||(17046713-17046747)
chr1 (2-36)||(19899025-19899059)
chr1 (1-30)||(322862-322891)
chr1 (1-30)||(38967572-38967601)
chr1 (1-30)||(39583093-39583122)
chr1 (94-142)||(51977200-51977248)
[»] chr5 (21 HSPs)
chr5 (1-51)||(5998009-5998059)
chr5 (2-50)||(1711326-1711374)
chr5 (2-50)||(12713278-12713326)
chr5 (2-50)||(12774542-12774590)
chr5 (1-36)||(27130320-27130355)
chr5 (96-142)||(1282254-1282300)
chr5 (2-52)||(2236639-2236689)
chr5 (94-136)||(30002862-30002904)
chr5 (152-238)||(39087407-39087493)
chr5 (95-136)||(42310848-42310889)
chr5 (2-50)||(13228595-13228643)
chr5 (96-142)||(1282969-1283015)
chr5 (2-40)||(6604033-6604071)
chr5 (2-36)||(32382829-32382863)
chr5 (2-35)||(32381797-32381830)
chr5 (1-50)||(35235842-35235891)
chr5 (1-30)||(39246951-39246980)
chr5 (2-30)||(9587310-9587338)
chr5 (2-50)||(10697235-10697283)
chr5 (2-50)||(30412735-30412783)
chr5 (9-45)||(43402429-43402465)
[»] scaffold0016 (1 HSPs)
scaffold0016 (94-139)||(67245-67290)
[»] scaffold0122 (1 HSPs)
scaffold0122 (2-50)||(12849-12897)
[»] scaffold0075 (1 HSPs)
scaffold0075 (2-36)||(27267-27301)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-45)||(431243-431279)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 38544374 - 38544212
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcc 195  Q
    ||||||||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  38544374 ggtggcatttagggtgggaatgagaaatatttttccaccatgggaaacacaagatcaatggttagattgtacacttctattaaatcttatcatgctctct 38544275  T
Q  196 cacacctaattctaatgatttctcattccaaacttttctcatcttcctcccacctacctatgt 258  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38544274 cacacctaattctaatggtttctcattccaaacttttctcatcttcctcccacctacctatgt 38544212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 2320232 - 2320160
Alignment:
Q  127 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccaca 199  Q
    |||||||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| |||||||||    
T  2320232 ttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccaca 2320160  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 10500953 - 10500998
Alignment:
Q  97 gtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||    
T  10500953 gtggcatttagggtgggaatggaaaagatttttccaccatgggaaa 10500998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 28520945 - 28520990
Alignment:
Q  50 caaaacatggagaacgtgatagcaataggagacacaaaaatgattg 95  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||    
T  28520945 caaaatatagagaacgtgatagcaataggtgacacaaaaatgattg 28520990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 1893974 - 1894022
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  1893974 tataagctaaaagctaaaagctctttttttgggtttcccaaacagaccc 1894022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 35885336 - 35885376
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccat 136  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  35885336 ggtggcatttagggtgggaatggaaaagagtttcccaccat 35885376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 38171559 - 38171607
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||| ||||    
T  38171559 tataaactaaaagctaaaagctcttttttggggtttcccaaacagaccc 38171607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39320190 - 39320221
Alignment:
Q  1 ttataagctataagctaaaagctcttttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  39320190 ttataagctataagctaaaagctcttttttgg 39320221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 6338332 - 6338298
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  6338332 tataagctagaagctaaaagctcttttttggggtt 6338298  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 10501960 - 10501914
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||| || ||||||||| | |||||||||||    
T  10501960 ggtggcatttagggtgggaagggaaaagatttttctaccatgggaaa 10501914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 17081668 - 17081634
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  17081668 tataagctaaaagctaaaagctcttttttggggtt 17081634  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 17115552 - 17115518
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  17115552 tataagctaaaagctaaaagctcttttttggggtt 17115518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 23676885 - 23676851
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  23676885 tataagctaaaagctaaaagctcttttttggggtt 23676851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41694033 - 41694063
Alignment:
Q  1 ttataagctataagctaaaagctcttttttg 31  Q
    |||||||||||||||||||||||||||||||    
T  41694033 ttataagctataagctaaaagctcttttttg 41694063  T

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Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 43276910 - 43276944
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  43276910 tataagctaaaagctaaaagctcttttttggggtt 43276944  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 27781124 - 27781095
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  27781124 ttataagctataagctaaaagctctttttt 27781095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41313397 - 41313368
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  41313397 ttataagctataagctaaaagctctttttt 41313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 788026 - 788066
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccat 136  Q
    ||||||||||||||||||||||| ||| | |||||||||||    
T  788026 ggtggcatttagggtgggaatgggaaaaagtttcccaccat 788066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 28709321 - 28709273
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||| || |||||||||||||||||||||| |||||| |||| ||||    
T  28709321 tataagttaaaagctaaaagctcttttttgggttttcccaaacagaccc 28709273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 28716678 - 28716630
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||| || |||||||||||||||||||||| |||||| |||| ||||    
T  28716678 tataagttaaaagctaaaagctcttttttgggttttcccaaacagaccc 28716630  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 20040258 - 20040174
Alignment:
Q  152 aatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaaacttttctcatc 238  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||||||||  |||||  |||||  |||||||||||||||||    
T  20040258 aatggttagattgtgcacttctattaaatcttatcatgttctcccacacctaatcttaatggcttctc--tccaaacttttctcatc 20040174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 43507683 - 43507733
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccca 51  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  43507683 ttataagctataagctaaaagctcttttttagggtttcccaaacagaccca 43507733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 5039787 - 5039739
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  5039787 tataagctaaaagctaaaagctcttttttggggtttcccaaacagaccc 5039739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 13111872 - 13111921
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccca 51  Q
    ||||||||| |||||||||||| |||||||||||||||| |||| |||||    
T  13111872 tataagctaaaagctaaaagctattttttggggtttcccaaacagaccca 13111921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24402173 - 24402222
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  24402173 ttataagctaaaagctaaaagctctttttttgggtttcccaaacagaccc 24402222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 2546453 - 2546489
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttc 38  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2546453 tataagctaaaagctaaaagctcttttttggggtttc 2546489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 40025071 - 40025119
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  40025071 tataagctaaaagctaaaagctcttttttggagtttcccaaacagaccc 40025119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 42946517 - 42946477
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccat 136  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  42946517 ggtggcatttagggtgggaatgggaaagagtttcccaccat 42946477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29514854 - 29514819
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  29514854 ttataagctaaaagctaaaagctcttttttggggtt 29514819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 4453652 - 4453686
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  4453652 tataagctaaaagctaaaagctcttttttggggtt 4453686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 21865258 - 21865224
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  21865258 tataagctaaaagctaaaagctcttttttggggtt 21865224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 26021959 - 26021913
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||| || ||||| ||||||||||| |||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 26021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15521481 - 15521429
Alignment:
Q  5 aagctataagctaaaagctcttttttggggtttccctaacaaacccaaaacat 57  Q
    |||||| ||||||||||||||||||| |||||| || |||| ||||| |||||    
T  15521481 aagctaaaagctaaaagctctttttttgggttttccaaacagacccataacat 15521429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17263874 - 17263910
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggttt 37  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  17263874 ttataagctaaaagctaaaagctctttttttgggttt 17263910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 240
Target Start/End: Original strand, 18246207 - 18246321
Alignment:
Q  126 tttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattcca 225  Q
    ||||||||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | |||||    
T  18246207 tttcccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttcca 18246306  T
Q  226 aacttttctcatctt 240  Q
    |||||||||||||||    
T  18246307 aacttttctcatctt 18246321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10856155 - 10856106
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10856155 ttataagctataagctaaaagctcttttttggggtttcccaaacacaccc 10856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34685139 - 34685174
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  34685139 ttataagctataagctaaaagctcttttttggggtt 34685174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 34903974 - 34903926
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  34903974 tataagctaaaagctaaaagctcttttttggagtttcccaaacagaccc 34903926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 1806447 - 1806478
Alignment:
Q  2 tataagctataagctaaaagctcttttttggg 33  Q
    ||||||||||||||||||||||||||||||||    
T  1806447 tataagctataagctaaaagctcttttttggg 1806478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 3802858 - 3802811
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaac 143  Q
    ||||||||||||||||||||||| ||||| |||| ||| |||||||||    
T  3802858 ggtggcatttagggtgggaatgggaaagaatttctcactatgggaaac 3802811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 14227667 - 14227701
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  14227667 tataagctaaaagctaaaagctcttttttggggtt 14227701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 32731773 - 32731739
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  32731773 tataagctaaaagctaaaagctcttttttggggtt 32731739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 558382 - 558334
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||| ||||    
T  558382 ttataagctataagctaaaagct-tttttttgggtttcccaaacagaccc 558334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 16990613 - 16990496
Alignment:
Q  130 ccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaaact 229  Q
    ||||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | |||||||||    
T  16990613 ccaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaaact 16990514  T
Q  230 tttctcatcttcctccca 247  Q
    ||||||||||| ||||||    
T  16990513 tttctcatcttgctccca 16990496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36008130 - 36008169
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36008130 ttataagctataagctaaaagctcttttttggggtttccc 36008169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 47417608 - 47417656
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  47417608 tataagctaaaagctaaaagctcttttttggggtttcccaaacagaccc 47417656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 24471830 - 24471876
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||||||| ||||| ||||||||||| |||||    
T  24471830 ggtggcatttagggtgggaatggaaaagagtttcccaccataggaaa 24471876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4355717 - 4355766
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||||||||||||||||||||||| |||||| || |||| ||||    
T  4355717 ttataagctataagctaaaagctctttttttgggtttaccaaacagaccc 4355766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4939510 - 4939559
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||| ||||    
T  4939510 ttataaactataagctaaaagctcttttttagggtttcccaaacagaccc 4939559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 28307266 - 28307217
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccca 51  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| |||||    
T  28307266 tataagctaaaagctaaaagctctttttttgggtttcccaaacagaccca 28307217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31678988 - 31678939
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||||||||||||| |||||||||||||||  || |||||||||    
T  31678988 ttataagctataagctaaaaactcttttttggggttaaccaaacaaaccc 31678939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 5825334 - 5825374
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccat 136  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  5825334 ggtggcatttagggtgggaatgggaaagagtttcccaccat 5825374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 8829948 - 8829996
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| || |||||||||||||||||||||||||| |||| ||||    
T  8829948 tataagctaaaaactaaaagctcttttttggggtttcccaaacagaccc 8829996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 33114993 - 33114957
Alignment:
Q  9 tataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||||||||||||||||||||| ||||    
T  33114993 tataagctaaaagctcttttttggggtttcccaaaca 33114957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 42116907 - 42116859
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  42116907 tataagctaaaagctaaaagctcttttttgaggtttcccaaacagaccc 42116859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 29413550 - 29413519
Alignment:
Q  1 ttataagctataagctaaaagctcttttttgg 32  Q
    ||||||||||||||||||||||||||||||||    
T  29413550 ttataagctataagctaaaagctcttttttgg 29413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 35428212 - 35428161
Alignment:
Q  91 gattgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||| |||||||||||||||||||||||  |||| |||||||| ||||||||    
T  35428212 gattaggtggcatttagggtgggaatggggaagagtttcccactatgggaaa 35428161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3009730 - 3009692
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttcc 39  Q
    |||||||||||||||||||||||||||||| || |||||    
T  3009730 ttataagctataagctaaaagctctttttttggttttcc 3009692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 11600694 - 11600660
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  11600694 tataagctaaaagctaaaagctcttttttggggtt 11600660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 25199429 - 25199463
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  25199429 tataagctaaaagctaaaagctcttttttggggtt 25199463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 35777519 - 35777553
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  35777519 tataagctaaaagctaaaagctcttttttggggtt 35777553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 11152064 - 11152093
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  11152064 ttataagctataagctaaaagctctttttt 11152093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 23867994 - 23868023
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  23867994 ttataagctataagctaaaagctctttttt 23868023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 29663948 - 29663919
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  29663948 ttataagctataagctaaaagctctttttt 29663919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33005253 - 33005282
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  33005253 ttataagctataagctaaaagctctttttt 33005282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 52915850 - 52915899
Alignment:
Q  93 ttgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||||| | || ||||||| ||| |||||||||||    
T  52915850 ttgggtggcatttagggtgggtagggaaaagattctcctaccatgggaaa 52915899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35468034 - 35467990
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||||    
T  35468034 ttataagctataagttaaaagctctttttttgagtttcccaaaca 35467990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 54542064 - 54542113
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  54542064 ttataagctataagctaaaagctcttttttagggtttcccaaacaaaccc 54542113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 37241984 - 37242104
Alignment:
Q  127 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaa 226  Q
    |||| ||||||||  ||||||||| |||||||||||||| || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | ||||||    
T  37241984 ttcctaccatgggtcacacaagataaatggttagattgtgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 37242083  T
Q  227 acttttctcatcttcctccca 247  Q
    |||||||||||||| ||||||    
T  37242084 acttttctcatcttgctccca 37242104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52788699 - 52788660
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52788699 ttataagctataagctaaaagctcttttttggggtttccc 52788660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52794918 - 52794879
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52794918 ttataagctataagctaaaagctcttttttggggtttccc 52794879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48943014 - 48942965
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  48943014 ttataagctataagctaaaagctctttttttgggtttcccaaacagaccc 48942965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 1258696 - 1258816
Alignment:
Q  127 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaa 226  Q
    ||||||||||||   ||||||||| |||||||||||| | || ||| |||||| ||||||||| ||||||||| || ||   |||   ||| | ||||||    
T  1258696 ttcccaccatggatcacacaagataaatggttagattatgcatttctattaaagcttatcatgttctcccacatctgatctcaatagcttcactttccaa 1258795  T
Q  227 acttttctcatcttcctccca 247  Q
    |||||||||||||| ||||||    
T  1258796 acttttctcatcttgctccca 1258816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 42147597 - 42147553
Alignment:
Q  95 gggtggcatttagggtgggaatggtaaagattttcccaccatggg 139  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  42147597 gggtggcatttagggtgggaaggggaaagattttcccaccatggg 42147553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 28677027 - 28677077
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaacccaa 52  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| ||||||    
T  28677027 tataagctaaaagctaaaagctcttttttagggtttcccaaacatacccaa 28677077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 42146800 - 42146845
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  42146800 ggtggcatttagggtggga-tgggaaagattttcccaccatgggaaa 42146845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 8872888 - 8872839
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccca 51  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| |||||    
T  8872888 tataagctaaaagctaaaagctctttttttgggtttcccaaacagaccca 8872839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 50306573 - 50306525
Alignment:
Q  94 tgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||||| || ||||| ||||||||||| |||||    
T  50306573 tgggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 50306525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39469936 - 39469901
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  39469936 ttataagctataagctaaaagctcttttttagggtt 39469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 43740407 - 43740442
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  43740407 ttataagctataagctaaaagctcttttttagggtt 43740442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 16127276 - 16127310
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  16127276 tataagctaaaagctaaaagctcttttttggggtt 16127310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 19948455 - 19948489
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  19948455 tataagctagaagctaaaagctcttttttggggtt 19948489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 26540975 - 26540941
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  26540975 tataagctaaaagctaaaagctcttttttggggtt 26540941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 29081418 - 29081452
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  29081418 tataagctaaaagctaaaagctcttttttggggtt 29081452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 37088299 - 37088261
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccc 40  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  37088299 tataagctaaaagctaaaagctctttttttgggtttccc 37088261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4240301 - 4240253
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||| ||||    
T  4240301 ttataagttataagctaaaagctctttttt-gggtttcccaaacagaccc 4240253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24536826 - 24536871
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaa 47  Q
    |||||||||  |||||||||||||||||||| ||||||| ||||||    
T  24536826 tataagctaagagctaaaagctcttttttggagtttcccaaacaaa 24536871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37714094 - 37714123
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  37714094 ttataagctataagctaaaagctctttttt 37714123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 51492504 - 51492459
Alignment:
Q  97 gtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||  |  |||||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaa 51492459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 53779054 - 53779005
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||| |||||||||||||||||||  |||||||| |||| ||||    
T  53779054 ttataagctaaaagctaaaagctctttttttaggtttcccaaacagaccc 53779005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 55305238 - 55305267
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  55305238 ttataagctataagctaaaagctctttttt 55305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 46248101 - 46248148
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| || |||||||||||||||| ||||||||| |||||||||    
T  46248101 tataagctaaaaactaaaagctctttttt-gggtttcccaaacaaaccc 46248148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 50317158 - 50317190
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggg 33  Q
    |||||||||||||| ||||||||||||||||||    
T  50317158 ttataagctataagttaaaagctcttttttggg 50317190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27089788 - 27089832
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  27089788 ttataagctataagctaaaagctcttttttggggtttcccaaaca 27089832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27188513 - 27188469
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  27188513 ttataagctataagctaaaagctcttttttggggtttcccaaaca 27188469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 31234147 - 31234267
Alignment:
Q  127 ttcccaccatgggaaacacaagatcaatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaa 226  Q
    ||||||||||||   ||||||||| |||| |||||||||||| ||| |||||| ||||||||| ||||| ||| || ||   |||   ||| | ||||||    
T  31234147 ttcccaccatggatcacacaagataaatgattagattgtacatttctattaaagcttatcatgttctcctacatctgatctcaatagcttcactttccaa 31234246  T
Q  227 acttttctcatcttcctccca 247  Q
    |||||||||||||| ||||||    
T  31234247 acttttctcatcttgctccca 31234267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 9378729 - 9378775
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||    
T  9378729 ggtggcatttagggtgggaaggggaaagatttttccaccatgggaaa 9378775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 35587602 - 35587570
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggg 33  Q
    |||||||||||||||||||||||||||||||||    
T  35587602 ttataagctataagctaaaagctcttttttggg 35587570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31511323 - 31511288
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31511323 ttataagctataagctaaaagctcttttttgaggtt 31511288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34709256 - 34709221
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  34709256 ttataagctaaaagctaaaagctcttttttggggtt 34709221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 43134420 - 43134365
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaacccaaaacat 57  Q
    ||||||||| ||||||||||||||||||| |||||| || |||| |||| ||||||    
T  43134420 tataagctaaaagctaaaagctctttttttgggtttaccaaacagaccctaaacat 43134365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45222205 - 45222240
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  45222205 ttataaactataagctaaaagctcttttttggggtt 45222240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 36436169 - 36436135
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  36436169 tataagctaaaagctaaaagctcttttttggggtt 36436135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 10312169 - 10312221
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaacccaaaa 54  Q
    ||||||||| |||||||||||||||||||   ||||||| |||| ||||||||    
T  10312169 tataagctaaaagctaaaagctcttttttttagtttcccaaacagacccaaaa 10312221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48832185 - 48832217
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggg 33  Q
    |||||||||| ||||||||||||||||||||||    
T  48832185 ttataagctaaaagctaaaagctcttttttggg 48832217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46369831 - 46369787
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  46369831 ttataagctataagctaaaagctcttttttggggtttcccaaaca 46369787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 3270685 - 3270636
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  3270685 ttataagctataagctaaaagctctttttttgggtttcccaaacagaccc 3270636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 50351058 - 50351014
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||    
T  50351058 ttataagctataagctaaaagctcttttttggagtttcccaaaca 50351014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 15373956 - 15374003
Alignment:
Q  95 gggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||    
T  15373956 gggtggcatttagggtgggatggggaaagattttcccaccatgggaaa 15374003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 15374745 - 15374702
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatggg 139  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  15374745 ggtggcatttagggtgggaaggggaaagattttcccaccatggg 15374702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 36838812 - 36838863
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaacccaaa 53  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| |||||||    
T  36838812 tataagctaaaagctaaaagctctttttttgggtttcccaaacagacccaaa 36838863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 46358657 - 46358611
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||  || |||||||||||||||||||||||    
T  46358657 ggtggcatttagggtgggatgggaaaagattttcccaccatgggaaa 46358611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 4124701 - 4124746
Alignment:
Q  97 gtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||    
T  4124701 gtggcatttagggtgggaatgggaaagagtttcccactatgggaaa 4124746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 30721741 - 30721790
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccca 51  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| |||||    
T  30721741 tataagctaaaagctaaaagctctttttttgggtttcccaaacagaccca 30721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 7711071 - 7711119
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  7711071 tataagctaaaagctaaaagctctttttttgggtttcccaaacagaccc 7711119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 3788434 - 3788481
Alignment:
Q  95 gggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||||| || ||||| ||||||||||| |||||    
T  3788434 gggtggcatttagggtgggaaggggaaagagtttcccaccataggaaa 3788481  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 33524546 - 33524495
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaacccaaa 53  Q
    ||||||||| |||||||||||||||||||||||||  || |||| |||||||    
T  33524546 tataagctaaaagctaaaagctcttttttggggttaaccaaacagacccaaa 33524495  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 4125465 - 4125419
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||||||| ||||| |||||||| || |||||    
T  4125465 ggtggcatttagggtgggaatgggaaagagtttcccactataggaaa 4125419  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 5101899 - 5101853
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||||||||||||||||| | |||||||| || ||||||||||||||    
T  5101899 ggtggcatttagggtgggtaaggtaaagagttacccaccatgggaaa 5101853  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 17046747 - 17046713
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  17046747 tataagctaaaagctaaaagctcttttttggggtt 17046713  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 19899025 - 19899059
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  19899025 tataagctaaaagctaaaagctcttttttggggtt 19899059  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 322891 - 322862
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  322891 ttataagctataagctaaaagctctttttt 322862  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38967572 - 38967601
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  38967572 ttataagctataagctaaaagctctttttt 38967601  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39583122 - 39583093
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  39583122 ttataagctataagctaaaagctctttttt 39583093  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 51977248 - 51977200
Alignment:
Q  94 tgggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||| ||||| ||||| ||| |||| ||||||||    
T  51977248 tgggtggcatttagggtggaaatgggaaagagttttccactatgggaaa 51977200  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5998009 - 5998059
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccca 51  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  5998009 ttataagctataagctaaaagctcatttttggggtttcccaaacagaccca 5998059  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 1711326 - 1711374
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  1711326 tataagctataagctaaaagctctttttttgggtttcccaaacagaccc 1711374  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 12713326 - 12713278
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  12713326 tataagctaaaagctaaaagctcttttttggggtttcccaaacagaccc 12713278  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 12774590 - 12774542
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  12774590 tataagctaaaagctaaaagctcttttttggggtttcccaaacagaccc 12774542  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 27130355 - 27130320
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  27130355 ttataagctataagctaaaagctcttttttggggtt 27130320  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 1282254 - 1282300
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  1282254 ggtggcatttagggtgggaatgggaaagagtttcccactatgggaaa 1282300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 2236639 - 2236689
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaacccaa 52  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| ||||||    
T  2236639 tataagctaaaagctaaaagctctttttttgggtttcccaaacagacccaa 2236689  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 30002862 - 30002904
Alignment:
Q  94 tgggtggcatttagggtgggaatggtaaagattttcccaccat 136  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  30002862 tgggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 39087493 - 39087407
Alignment:
Q  152 aatggttagattgtacacttccattaaatcttatcatgctctcccacacctaattctaatgatttctcattccaaacttttctcatc 238  Q
    |||||||||||| | || ||| || ||| ||||||||| |||||||||||||||  ||||   ||||| ||||||||||||||||||    
T  39087493 aatggttagattttgcatttctataaaaccttatcatgttctcccacacctaatcttaattgcttctctttccaaacttttctcatc 39087407  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 42310848 - 42310889
Alignment:
Q  95 gggtggcatttagggtgggaatggtaaagattttcccaccat 136  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  42310848 gggtggcatttagggtgggaatgggaaagagtttcccaccat 42310889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 13228595 - 13228643
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||| ||||    
T  13228595 tataagctaaaagctaaaagctcttttttggagtttcccaaacagaccc 13228643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 1283015 - 1282969
Alignment:
Q  96 ggtggcatttagggtgggaatggtaaagattttcccaccatgggaaa 142  Q
    |||| |||||||||||||||||| ||||| |||||||| ||||||||    
T  1283015 ggtgacatttagggtgggaatgggaaagagtttcccactatgggaaa 1282969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 6604033 - 6604071
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccc 40  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  6604033 tataagctaaaagctaaaaactcttttttggggtttccc 6604071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 32382863 - 32382829
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  32382863 tataagctaaaagctaaaagctcttttttggggtt 32382829  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 32381797 - 32381830
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggt 35  Q
    ||||||||| ||||||||||||||||||||||||    
T  32381797 tataagctaaaagctaaaagctcttttttggggt 32381830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 35235842 - 35235891
Alignment:
Q  1 ttataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||| |||||||||||||||||||||| ||| || |||| ||||    
T  35235842 ttataagctaaaagctaaaagctcttttttgggattttccaaacagaccc 35235891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 39246951 - 39246980
Alignment:
Q  1 ttataagctataagctaaaagctctttttt 30  Q
    ||||||||||||||||||||||||||||||    
T  39246951 ttataagctataagctaaaagctctttttt 39246980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 9587310 - 9587338
Alignment:
Q  2 tataagctataagctaaaagctctttttt 30  Q
    |||||||||||||||||||||||||||||    
T  9587310 tataagctataagctaaaagctctttttt 9587338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 10697283 - 10697235
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    |||||||||  |||||||||||||||||| |||||| || |||||||||    
T  10697283 tataagctaagagctaaaagctctttttttgggtttaccaaacaaaccc 10697235  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 30412735 - 30412783
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| |||||||||||| |||||| ||||||||| |||| ||||    
T  30412735 tataagctaaaagctaaaagctttttttttgggtttcccaaacagaccc 30412783  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 43402465 - 43402429
Alignment:
Q  9 tataagctaaaagctcttttttggggtttccctaaca 45  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  43402465 tataagctataagctcttttttggggtttcccaaaca 43402429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 67245 - 67290
Alignment:
Q  94 tgggtggcatttagggtgggaatggtaaagattttcccaccatggg 139  Q
    |||||||||||||||||||||| || ||||||||||||||||||||    
T  67245 tgggtggcatttagggtgggaaggggaaagattttcccaccatggg 67290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 12849 - 12897
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtttccctaacaaaccc 50  Q
    ||||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  12849 tataagctaaaagctaaaagctctttttttgggtttcccaaacagaccc 12897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 27267 - 27301
Alignment:
Q  2 tataagctataagctaaaagctcttttttggggtt 36  Q
    ||||||||| |||||||||||||||||||||||||    
T  27267 tataagctaaaagctaaaagctcttttttggggtt 27301  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 431279 - 431243
Alignment:
Q  9 tataagctaaaagctcttttttggggtttccctaaca 45  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  431279 tataagctaaaagctctttttttgggtttcccaaaca 431243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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