View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_low_4 (Length: 469)
Name: NF3697_low_4
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Original strand, 11034096 - 11034539
Alignment:
| Q |
8 |
ttactattgacaagttttttagaagaaaagacatcatactaacaacagaacaagnnnnnnnnatagtttttgtactgaaaatttgttttctaaactttat |
107 |
Q |
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| T |
11034096 |
ttactatttacaagttttttagaagaaaagacatcatactaacaacagaacaagttttttttatagtttttgtactgaaaatttgttttctaaactttat |
11034195 |
T |
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| Q |
108 |
tttaagtcttatgtcttgcttacctatgcgactcgataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagt |
207 |
Q |
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| T |
11034196 |
tttaagtcttatgtcttgcttacctgtgcgactcgataaacatgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagt |
11034295 |
T |
|
| Q |
208 |
aacagattaagtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaaaattaagcaaccaacttgaaaga |
307 |
Q |
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| T |
11034296 |
aacagattgagtgttaattagtagcactcactctaacaaatgggtgtggaagatcgatgtaattgtaaataaaagaaaattaagcaaccaacttgaaaaa |
11034395 |
T |
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| Q |
308 |
atagagtatctaaagcgcagaattgcatatataccaaccataattacagtgagcctggttattttgatcgagctccgcatacgcatatgaaacatctaat |
407 |
Q |
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| T |
11034396 |
atagagtatctaaagagcagaattgcatatataccaaccataattacagtgagcctggttattttgatcgagctccgcatacgcatacgaaacatctaat |
11034495 |
T |
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| Q |
408 |
ttacaaaaactgttgagccaagaaagttcaaatccataaaacat |
451 |
Q |
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| T |
11034496 |
ttacaaaaactgttgagccaagaaagttcaaatccataaaacat |
11034539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 142 - 389
Target Start/End: Original strand, 11008834 - 11009085
Alignment:
| Q |
142 |
gataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactct |
241 |
Q |
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| T |
11008834 |
gataaacgtgcaactatccaagccgcgttattccagtaatctgcaagagcaaacataaagcatagtgacatattgagtgttatttagtagcactcactct |
11008933 |
T |
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| Q |
242 |
aacaaatgggtgtggaagatcgatgtaattgtaaataaaag-aaaattaagcaaccaacttg-aaagaatagagtatctaaagcgcagaattgc--atat |
337 |
Q |
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| T |
11008934 |
aacaaatggatgtggaagatccacgcgattgtaaataatagaaaaattaagcatcgaaattgaaaaaaatagagtatataaatcgcacaactgcatatat |
11009033 |
T |
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| Q |
338 |
ataccaaccataattacagtgagcctggttattttgatcgagctccgcatac |
389 |
Q |
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| T |
11009034 |
ataccaaccatatttacagtgaggctggttatattgatcgagcactgcatac |
11009085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 448
Target Start/End: Original strand, 10921628 - 10921669
Alignment:
| Q |
407 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaa |
448 |
Q |
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| T |
10921628 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaa |
10921669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 451
Target Start/End: Complemental strand, 11003424 - 11003380
Alignment:
| Q |
407 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacat |
451 |
Q |
| |
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|||||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
11003424 |
tttacaaagactattgagccatgaaagttcaaatccataaaacat |
11003380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 11009103 - 11009138
Alignment:
| Q |
416 |
actgttgagccaagaaagttcaaatccataaaacat |
451 |
Q |
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| T |
11009103 |
actgttgagccaagaaagttcaaatccataatacat |
11009138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 451
Target Start/End: Complemental strand, 11000444 - 11000400
Alignment:
| Q |
407 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacat |
451 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
11000444 |
tttacaaaggctattgagccatgaaagttcaaatccataaaacat |
11000400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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