View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3697_low_6 (Length: 456)

Name: NF3697_low_6
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3697_low_6
NF3697_low_6
[»] chr1 (3 HSPs)
chr1 (16-456)||(34593100-34593538)
chr1 (290-339)||(2583065-2583114)
chr1 (126-182)||(34577609-34577665)
[»] chr5 (2 HSPs)
chr5 (233-340)||(25538790-25538894)
chr5 (290-325)||(24122981-24123016)
[»] chr6 (4 HSPs)
chr6 (123-182)||(32589846-32589905)
chr6 (123-182)||(32600294-32600353)
chr6 (259-340)||(20589647-20589726)
chr6 (125-187)||(24884037-24884099)
[»] scaffold0437 (1 HSPs)
scaffold0437 (290-340)||(14315-14365)
[»] chr3 (2 HSPs)
chr3 (290-340)||(16038000-16038050)
chr3 (290-340)||(16053496-16053546)
[»] chr2 (1 HSPs)
chr2 (290-340)||(20477468-20477518)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Complemental strand, 34593538 - 34593100
Alignment:
Q  16 aaggtatagataaaacagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34593538 aaggtatagataaaacagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttc 34593439  T
Q  116 cttctgttattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcata 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  34593438 cttctgttattgcagacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcata 34593340  T
Q  216 cactatccnnnnnnnnnaataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttg 315  Q
    ||||||||         |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34593339 cactatcctttttttttaataaaatttttgaggtaggcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttg 34593240  T
Q  316 atgtctgtcctatctcctggcttatnnnnnnnnccatacaccatccctaccatactatctcacgggttgatgcccgacaccaacacatttgattttattt 415  Q
    || ||||||||||||||||||||||         ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593239 atatctgtcctatctcctggcttataaaaaaaa-catacactatccctaccatactatctcacgggttgatgcccgacaccaacacatttgattttattt 34593141  T
Q  416 aatcattcttgttttcttaaattatactagtgtgtacgtat 456  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34593140 aatcattcttgttttcttaaattatactagtgtgtacgtat 34593100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 2583114 - 2583065
Alignment:
Q  290 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggctta 339  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| |||||    
T  2583114 agttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgctta 2583065  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
Q  126 tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 182  Q
    |||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  34577665 tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 34577609  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 340
Target Start/End: Original strand, 25538790 - 25538894
Alignment:
Q  233 aataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcc 332  Q
    ||||||||||||||| |||||| |||||||| ||  ||||||||| |||    | |||||||  ||||||||| ||||||||||||  ||||||||||||    
T  25538790 aataaaatttttgagttaggcggtagaggatagagattctccgagatgc---gatccagttggaatgtcggtgtttcctcttgatgcatgtcctatctcc 25538886  T
Q  333 tggcttat 340  Q
    || |||||    
T  25538887 tgacttat 25538894  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 24122981 - 24123016
Alignment:
Q  290 agttgagatgtcggtgattcctcttgatgtctgtcc 325  Q
    |||||||||||||||| |||||||||||||||||||    
T  24122981 agttgagatgtcggtgtttcctcttgatgtctgtcc 24123016  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
Q  123 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 182  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32589905 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32589846  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
Q  123 tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt 182  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| |  |||||||| |||||    
T  32600353 tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt 32600294  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 20589647 - 20589726
Alignment:
Q  259 aggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 340  Q
    |||||||| |||||||| ||||||| |  | |||||||||||||| | | |||||||||| ||||||| |||||||| ||||    
T  20589647 aggatggaggttctccggggtgccaac--ctagttgagatgtcggaggtccctcttgatgcctgtcctttctcctggtttat 20589726  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
Q  125 ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt 187  Q
    ||||||| ||| ||||| ||||||| ||||| |||||||||| | ||||||||||||| ||||    
T  24884037 ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt 24884099  T

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Target: scaffold0437 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 14365 - 14315
Alignment:
Q  290 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 340  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| ||||||    
T  14365 agttgggatgtcgatgatgcctcttgatgtctgtcctctctccttgcttat 14315  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 16038000 - 16038050
Alignment:
Q  290 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 340  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  16038000 agttgagatgtcgatgatgcctcttgatgtctgtcatctctccttgcttat 16038050  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 16053496 - 16053546
Alignment:
Q  290 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 340  Q
    ||||||||||||| |||| |||||||||||||||| | |||||| ||||||    
T  16053496 agttgagatgtcgatgatgcctcttgatgtctgtcatctctccttgcttat 16053546  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 20477468 - 20477518
Alignment:
Q  290 agttgagatgtcggtgattcctcttgatgtctgtcctatctcctggcttat 340  Q
    ||||| ||||||| |||| |||||||||||||||||| |||||| ||||||    
T  20477468 agttgggatgtcgatgatgcctcttgatgtctgtcctttctccttgcttat 20477518  T

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