View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_low_7 (Length: 455)
Name: NF3697_low_7
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 28475041 - 28475225
Alignment:
| Q |
11 |
cacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatacaaaagttg |
110 |
Q |
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| T |
28475041 |
cacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatggtacatttaattgactgtgactaatacaaaagttg |
28475140 |
T |
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| Q |
111 |
ttttttctttgtccatgatgttcttgatttgactgtttgacttataacctaaagagacagagtttaaatctcctcgtagatagttg |
196 |
Q |
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| T |
28475141 |
-tttttctttgtccatgatgtgcttgatttgactgtttgacttataacctaaagggacagagtttaaatctcctcgtagatagttg |
28475225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 293 - 437
Target Start/End: Original strand, 28475329 - 28475473
Alignment:
| Q |
293 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
392 |
Q |
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| T |
28475329 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
28475428 |
T |
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| Q |
393 |
atctgttgctcttcatcatgttttcgacactccggatgacaagat |
437 |
Q |
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| T |
28475429 |
atcagttgctcttcatcatgttttcgacactccggatgacaagat |
28475473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 293 - 437
Target Start/End: Original strand, 28466779 - 28466923
Alignment:
| Q |
293 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacactggtgggcatcttagctcaagcttgggagtggtggagtt |
392 |
Q |
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| T |
28466779 |
aggatctggaacaattggctgctgaattgagggctgacattgtacacagtgtgtcagacaccggtggtcatcttagctcaagcttgggagtggtggagtt |
28466878 |
T |
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| Q |
393 |
atctgttgctcttcatcatgttttcgacactccggatgacaagat |
437 |
Q |
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| T |
28466879 |
atcagttgctcttcatcatgttttcgacactccggatgacaagat |
28466923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 28466620 - 28466710
Alignment:
| Q |
11 |
cacagaggtttgaatcctttatcaaaaactaggatttatgtttcataggttatggaatatgtatgctacattttattgactgtgactaatac |
102 |
Q |
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| T |
28466620 |
cacagaggtttgaatcctttattaaac-ctaggaattatgtttgatatgttatggaataagcatggtacattttattgactgtgactaatac |
28466710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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