View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_low_8 (Length: 439)
Name: NF3697_low_8
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 2627785 - 2627412
Alignment:
| Q |
10 |
acatcatcatctcatcaccaaaatttatcaaaacaccaagaatcaaatcttaaatcgaaacacacagatggaggagattggaatcgaaaacctccttgtt |
109 |
Q |
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| T |
2627785 |
acatcatcatctcatcaccaaaatttatcaaaacaccaa---------cttaaatcgaaacacaaagatggaggagattggaatcgaaaacctccttgtt |
2627695 |
T |
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| Q |
110 |
cctcattcacacgaatctgtaacacataatcgaactcaaaattgaaatcgaattgaaatcagtttgtttcagttttgattttttgagtgaagatgcagtt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
2627694 |
cctcattcacacgaatctgtaacacataatcgaactcaaaattaaaatcaaattgaaatcagtttgtttcagttttgattttttgaatgaagatgcggtt |
2627595 |
T |
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| Q |
210 |
tgacgaattgtgcaaataaaccaacctttagatttagnnnnnnnnnnnnagaagattttggtttgaagaaaacatatgggttcacaaggnnnnnnnnnnt |
309 |
Q |
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| T |
2627594 |
tgacgaattgtgcaaataaaccaacctttagatttag-ttttttattttagaagattttggtttgaagaaaacatatgggttcacaagg------aagat |
2627502 |
T |
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| Q |
310 |
caatttttgaggcatttatttcatctgaatttctgggnnnnnnnagaagatctcatccgaattttgagtgtttataggtacttacattaaa |
400 |
Q |
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| T |
2627501 |
caatttttgaggcatttatttcatttgaatttctggg-ttttttagaagatctcatccgaattttgagtgtttacaggtacttacattaaa |
2627412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 55190359 - 55190216
Alignment:
| Q |
11 |
catcatcatctcatcaccaaaatttatcaaaacaccaagaatcaaatcttaaatcgaaacacacagatggaggagattggaatcgaaaacctccttgttc |
110 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||| |
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| T |
55190359 |
catcatcttctcatcaccaaaatttatcaaa-caccaagaatcaaatcttaaattgaaacacagagatggaggagattggaatcg-aaatctccttgttc |
55190262 |
T |
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| Q |
111 |
ctcattcacacgaatctgtaacacataatcgaactcaaaattgaaa |
156 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
55190261 |
ctcattcacacgaatctgtaacccataatcgaaatcaaaattgaaa |
55190216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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