View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3697_low_9 (Length: 399)
Name: NF3697_low_9
Description: NF3697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3697_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 20990741 - 20990365
Alignment:
| Q |
18 |
atttcaaagggaatcaaaccaagtgaccgaagcttaagg----taataagcagtctgtgtgatgtcggcgaactacaaaaagctgtggaattgagtcgag |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20990741 |
atttcaaaaggaatcaaaccaagtgaccgaagcttaaggaaggtaataagcagcctgtgtgatgtcggcaaactacaaaaagctgtggaattgagtcgag |
20990642 |
T |
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| Q |
114 |
aaatgggatatagaggatggaaacatgattctctcatccaaacaagaatcatggaaagccttctttcccttggttttgtggaaaatgcggaatgtttttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20990641 |
aaatgggatatagaggatggaaacatgattctctcatccaaacaagaatcatggaaagccttctttcccttggttttgtggaaaatgcggaatgtttttt |
20990542 |
T |
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| Q |
214 |
ggataggatcaaagtagaatctctaactcccgataatattgattacaattacttgattaagcgtttttgtgagtttggaagattaaagaaggcagttcat |
313 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20990541 |
ggataggatgaaagaagaatctctaactcccgataatattgattacaattacttgattaagcgtttttgtgagtttggaagattaaagaaggcagttcat |
20990442 |
T |
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| Q |
314 |
cttatgaacataatgctaaagaaatccaacattccgatttcaacgagctatgattttctcattcgtggattctgtgc |
390 |
Q |
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| T |
20990441 |
cttatgaacataatgctaaagaaatccaacattccgatttcaacgagctatgattttctcattcatggattctgtgc |
20990365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 21002009 - 21001631
Alignment:
| Q |
18 |
atttcaaagggaatcaaaccaagtgaccgaagctt----aaggtaataagcagtctgtgtgatgtcggcgaactacaaaaagctgtggaattgagtcgag |
113 |
Q |
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|||||||||||| | ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
21002009 |
atttcaaagggactaaaaccgagtgaccgcagcttgaggaaggtaataagcagtctgtgtgatgtcggcgagctacaaaaagctatggaattgagtcgag |
21001910 |
T |
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| Q |
114 |
aaatgggatatagaggatggaaacatgattctctcatccaaacaagaatcatggaaagccttctttcccttggttttgtggaaaatgcggaatgtttttt |
213 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
21001909 |
ggatgggatttagaggatggatacatgattctctcatccaaacaagaattgtggaaagccttctttcccgtggttttatggaaaatgcagaatgtttttt |
21001810 |
T |
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| Q |
214 |
ggataggatcaaagtagaatctctaactcccgataatattgattacaattacttgattaagcgtttttgtgagtttggaagattaaagaaggcagttcat |
313 |
Q |
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||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21001809 |
ggacaggatggaagaagaatctctaactcccgataatattgattacaattacttgattaagcgtttttgtgagtttggaagattaaagaaggcggttcat |
21001710 |
T |
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| Q |
314 |
cttatgaacataatgctaaagaaatccaacattccgatttcaacgagctatgattttctcattcgtggattctgtgctc |
392 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21001709 |
cttatgaacataatgctaaagaaatccaacattcctatttcaacgagctatgattttctcatttatggattctgtgctc |
21001631 |
T |
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