View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3699_high_2 (Length: 437)
Name: NF3699_high_2
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3699_high_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 30056322 - 30056745
Alignment:
| Q |
1 |
tcattcgatgtaccataaccaaccattattacagcatggtctggcttagttccacattatcctgtaaatattccacttgagtaaaatctgatcataccac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30056322 |
tcattcgatgtaccataaccaactattattacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgatcataccac |
30056421 |
T |
|
| Q |
101 |
ttatatcgataccaacggaaaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30056422 |
ttatatcgataccaacggaaaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttg |
30056521 |
T |
|
| Q |
201 |
gcgacgaaccttcttactattatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatca |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30056522 |
gcgactaaccttcttactattatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgttttctaagacgaattcaaaagcatca |
30056621 |
T |
|
| Q |
301 |
atcaaataaccaccgttgcatccatttgtccaattacttctgacatgatccacaagttcttgttcagaaagggacactaaatttccactagttatttgtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30056622 |
atcaaataaccaccgttgcatccatttgtccaattacttctgacacgatccacaagttcttgttcagaaagggacactaaatttccactagttatttgtt |
30056721 |
T |
|
| Q |
401 |
cgataccttccagtgcacccacag |
424 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
30056722 |
ggataccttctagtgcacccacag |
30056745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 29746971 - 29746565
Alignment:
| Q |
1 |
tcattcgatgtaccataaccaaccattattacagcatggtctggcttagttccacattatcctgtaaatattccacttgagtaaaatctgatcataccac |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| | |
|
|
| T |
29746971 |
tcattcgatgtaccatagccaactattgttacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatttgagcatacctc |
29746872 |
T |
|
| Q |
101 |
ttatatcgataccaacggaaaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttg |
200 |
Q |
| |
|
| ||||| ||| ||| ||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
29746871 |
tcatatcaatattaaccgaaaccggttgattggccacaactttaagtagtgagtcctcgctatttttagggacttgctcgtagcccttaatctgaacttg |
29746772 |
T |
|
| Q |
201 |
gcgacgaaccttcttactattatttcctttaactcctctgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatca |
300 |
Q |
| |
|
| || | |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
29746771 |
gtgatgcaccttcttac---tatttcctttaactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaattgaatttaaaagcatca |
29746675 |
T |
|
| Q |
301 |
atcaaataaccaccgttgcatccatttgtccaattacttctgacatgatccacaagttcttgttcagaaagggacactaaatttccactagttatttgtt |
400 |
Q |
| |
|
||| || |||||| || |||||||| |||||||||||| |||| ||||||||||| ||| || |||| ||| |||||||||||||| |||||||||| |
|
|
| T |
29746674 |
atcttattaccaccattacatccattggtccaattacttgcgacacaatccacaagttgttgctctgaaaaggagactaaatttccactggttatttgtt |
29746575 |
T |
|
| Q |
401 |
cgataccttc |
410 |
Q |
| |
|
||||||||| |
|
|
| T |
29746574 |
ggataccttc |
29746565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 410
Target Start/End: Original strand, 29733264 - 29733667
Alignment:
| Q |
7 |
gatgtaccataaccaaccattattacagcatggtctggcttagttccacattatcctgtaaatattccacttgagtaaaatctgatcataccacttatat |
106 |
Q |
| |
|
||||||||||||||||| || ||| |||||||| ||||||||||||||||| ||||||||| || |||||||||||||| ||| ||| || || |||| |
|
|
| T |
29733264 |
gatgtaccataaccaactatggttaaagcatggtttggcttagttccacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatat |
29733363 |
T |
|
| Q |
107 |
cgataccaacggaaaccggttgattggccacaactttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgacg |
206 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||| || ||||||||||| ||||||| | ||| |
|
|
| T |
29733364 |
caataccaaccgaaaccggttgattggccacagctttaagtagtgaatcttcactattactagggacttcttcatagctcttaatttgaactttgtgact |
29733463 |
T |
|
| Q |
207 |
aaccttcttactattatttcctttaactcctc---tgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatcaatc |
303 |
Q |
| |
|
||||| |||| | |||||||||| ||| |||| |||||| |||||||||| ||||||||||| ||| |||| | ||||| |||||||| |||| |
|
|
| T |
29733464 |
tacctttttac---aagttcctttaacaactcgcttgtatggataatttgcttctgtcgcaattccaccattttctaaaatgaatttaaaagcattaatc |
29733560 |
T |
|
| Q |
304 |
aaataaccaccgttgcatccatttgtccaattacttctgacatgatccacaagttcttgttcagaaagggacactaaatttccactagttatttgttcga |
403 |
Q |
| |
|
| || ||| | ||||| || |||| | |||||| || ||||||||||| || || |||||||| |||||||||||||||||||||| || || |
|
|
| T |
29733561 |
atattaccgttatcacatcctttagtccgaccacttctatcacaatccacaagttgctgctctgaaagggaaactaaatttccactagttattttttgga |
29733660 |
T |
|
| Q |
404 |
taccttc |
410 |
Q |
| |
|
||||||| |
|
|
| T |
29733661 |
taccttc |
29733667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 228 - 410
Target Start/End: Original strand, 29606417 - 29606599
Alignment:
| Q |
228 |
tttaactcctctgtacggataacttgcttctgtggcaattccaccgtttactaagacgaattcaaaagcatcaatcaaataaccaccgttgcatccattt |
327 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||||| || |||||| || |||||||| |
|
|
| T |
29606417 |
tttaactcccttgtatggataacttgcttctgtggcaattccaccgttttctaaaatgaatttaaaagcatcaatcttattaccaccattacatccattg |
29606516 |
T |
|
| Q |
328 |
gtccaattacttctgacatgatccacaagttcttgttcagaaagggacactaaatttccactagttatttgttcgataccttc |
410 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||| || |||| ||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
29606517 |
gtccaattacttgtgacacaatccacaagttgttgctctgaaaaggagactaaatttccactgattatttgttggataccttc |
29606599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 30072842 - 30072992
Alignment:
| Q |
1 |
tcattcgatgtaccataaccaaccattattacagcatggtctggcttagttccacattatcctgtaaatattccacttgagtaaaatctgatcataccac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
30072842 |
tcattcgatgtaccataaccaactattgttacagcatggtttggcttagttccacattctcctgtaaatattccacttgagtaaaatctgaacatacctc |
30072941 |
T |
|
| Q |
101 |
ttat----atcgataccaacggaaaccggttgattggccacaactttaagc |
147 |
Q |
| |
|
| || ||| |||| ||| |||||||||||||| |||||| || ||||| |
|
|
| T |
30072942 |
tcataaacatcaatactaaccgaaaccggttgattagccacagctataagc |
30072992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 29729928 - 29730076
Alignment:
| Q |
7 |
gatgtaccataaccaaccattattacagcatggtctggcttagttccacattatcctgtaaatattccacttgagtaaaatctgatcataccacttatat |
106 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||||||||| ||||| ||||||||| || |||||||||||||| ||| ||| || || |||| |
|
|
| T |
29729928 |
gatgtaccataaccaactattgttacagcatggtttggcttagttctacattctcctgtaaaaatcccacttgagtaaaacttgaacatgcctctcatat |
29730027 |
T |
|
| Q |
107 |
cgataccaacggaaaccggttgattggccacaactttaagcagtgaatc |
155 |
Q |
| |
|
| |||| ||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29730028 |
caatactaaccgaaaccggttgattggccacagctttaagcagtgaatc |
29730076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 29934897 - 29935001
Alignment:
| Q |
1 |
tcattcgatgtaccataaccaaccattattacagcatggtctggcttagttccacattatcctgtaaatattccacttgagtaaaatctgatcataccac |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||| | || ||||||||||| ||||||| |||||||||| ||||||||||||| |||||| | |
|
|
| T |
29934897 |
tcattcgatgtaccatagccaactattgttacagcatggtttccctgagttccacattctcctgtagatattccactcgagtaaaatctgaacatacctc |
29934996 |
T |
|
| Q |
101 |
ttata |
105 |
Q |
| |
|
||||| |
|
|
| T |
29934997 |
ttata |
29935001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 34759009 - 34759101
Alignment:
| Q |
141 |
tttaagcagtgaatcctcactatttctagggacttgctcgtagctcttaatctgaacttggcgacgaaccttcttactattatttcctttaactcc |
236 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||| || ||||||| ||||||||||||||| |
|
|
| T |
34759009 |
tttaagtagtgaatcctcactatttttagggacttgcttatagctcttaatccaaacttggtgacacacattcttac---aatttcctttaactcc |
34759101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 31194201 - 31194252
Alignment:
| Q |
35 |
catggtctggcttagttccacattatcctgtaaatattccacttgagtaaaa |
86 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
31194201 |
catggtctagctcagttccacattctcctgtataaattccacttgagtaaaa |
31194252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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