View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3699_high_4 (Length: 323)
Name: NF3699_high_4
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3699_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 7790994 - 7791278
Alignment:
| Q |
17 |
aattgatttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaattttttgttctctaatttcaacttttgcccttgccatttctgt |
116 |
Q |
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| T |
7790994 |
aattgatttatatggtaagttaatccgataagtttaggcaagttgaaggaaaaacaattttttgttctctaatttcaacttttgcccttgccatttctgt |
7791093 |
T |
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| Q |
117 |
ttaacacccggaaagaaagctaatttcaaattacttagctacacctgaatttatatgaatcatttgttgtatgcctaattttatttcttctgttgatatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7791094 |
ttaacacccggaaagaaagctaatttcaaattacttagctacacctgaatttatatgaatcatttgttgtatgcctaattttatttcttctgttgatatt |
7791193 |
T |
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| Q |
217 |
atcttttggatgataaattattcgtccattgtttgtaaatggtgaaatggaatagacacatataaggataacttacaattttagc |
301 |
Q |
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| T |
7791194 |
atcttttggatgataaattattcatccattgtttgtaaatggtgaaatggaatagacacagataaggataacttccaattttagc |
7791278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 96 - 301
Target Start/End: Complemental strand, 7236967 - 7236761
Alignment:
| Q |
96 |
ttttgcccttgccatttctgtttaacacccggaaagaaagctaatttcaaattacttagctac-acctgaatttatatgaatcatttgttgtatgcctaa |
194 |
Q |
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| T |
7236967 |
ttttgcccttgccatttctgtttcacacccggaaagaaagctaatttcaaattaacgagcttgtaactgaatttatatgaatcattttttgtaggcctaa |
7236868 |
T |
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| Q |
195 |
ttttatttcttctgttgatattatcttttggatgataaattattcgtccattgtttgtaaatggtgaaatggaatagacacatataaggataacttacaa |
294 |
Q |
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| T |
7236867 |
ttttatttcttctgttcatattatccttccgatgataaattattcatccattgtttgtaaatagtgaaatggaatagacacagataaggataacttacaa |
7236768 |
T |
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| Q |
295 |
ttttagc |
301 |
Q |
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||||||| |
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| T |
7236767 |
ttttagc |
7236761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 7237027 - 7236970
Alignment:
| Q |
16 |
caattgatttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaa |
73 |
Q |
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| T |
7237027 |
caattgatttatatggttagttaatcctataagtttatgcaagttgaaggaaaaacaa |
7236970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 7802054 - 7802108
Alignment:
| Q |
212 |
atattatcttttggatgataaattattcgtccattgtttgtaaatggtgaaatgg |
266 |
Q |
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| T |
7802054 |
atattatcttttgtatgataaattatttatccgttgtttgtaaatggtgaaatgg |
7802108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 7766938 - 7767006
Alignment:
| Q |
231 |
aaattattcgtccattgtttgtaaatggtgaaatggaatagacacatataaggataacttacaattttag |
300 |
Q |
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| T |
7766938 |
aaattattcattcattgcttgtaaatggtgaaatggaatagacacgcatta-gataacttccaattttag |
7767006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7772933 - 7772859
Alignment:
| Q |
17 |
aattgatttatatggtaagttaatccgataagtttatgcaagttgaagga--aaaacaattttttgttctctaat |
89 |
Q |
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| T |
7772933 |
aattgttttatatggtaaattaatctgatgagtttatacatgttgaaggaaaaaaataaatttttgttctctaat |
7772859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 37826101 - 37826031
Alignment:
| Q |
23 |
tttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaattttttgttctctaatttca |
93 |
Q |
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|||||||||||| ||||| ||| || ||||||| |||||||||||| || |||||||||||||||||| |
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| T |
37826101 |
tttatatggtaaattaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttca |
37826031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 50669928 - 50670002
Alignment:
| Q |
17 |
aattgatttatatggtaagttaatccgataagtttatgcaagttgaaggaaaaacaattttttgttctctaattt |
91 |
Q |
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||||| |||||||||||| ||||| | | | |||||||| ||||||||||||| || |||||||||||||||| |
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| T |
50669928 |
aattgttttatatggtaaactaatctggttaatttatgcatgttgaaggaaaaagaaggttttgttctctaattt |
50670002 |
T |
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