View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3699_high_6 (Length: 236)
Name: NF3699_high_6
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3699_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11628736 - 11628516
Alignment:
| Q |
1 |
agtctagcagcatatttagctacattttttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11628736 |
agtctagcagcatatttagctacattttttatccggctaaaatctcccatccattcccttatggaaccagcggtatctccagttggtgtacgagcaaaca |
11628637 |
T |
|
| Q |
101 |
tccatagcgaactttcacgcaactgacttgatgaaaaagctagaaattcaaacttcttatcaccaataactatgccatttctaaggatggaaagaattct |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11628636 |
tccatagcgaactttcacgcaattgacttgatgaaaaagctagaaattcaaacttcttatcaccaataactatgccatttctaaggatggaaagaattct |
11628537 |
T |
|
| Q |
201 |
atagtatatatcagttcttcc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11628536 |
atagtatatatcagttcttcc |
11628516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11637496 - 11637279
Alignment:
| Q |
1 |
agtctagcagcatatttagctacattttttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| | || || ||||||| |||||||||||||| |
|
|
| T |
11637496 |
agtctagcagcatatttagccacattttttatacggctaaaatctcccatccattcccttatggaatcggcagtaagcccagttgttgtacgagcaaaca |
11637397 |
T |
|
| Q |
101 |
tccatagcgaactttcacgcaactgacttgatgaaaaagctagaaattcaaacttcttatcaccaataactatgccatttctaaggatggaaagaattct |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11637396 |
tccatagcgagttttcacgcaactgacttgatgagaaagctagaaattcaaacttcataccaccaatatctatgccatttctaaggatggaaagaattct |
11637297 |
T |
|
| Q |
201 |
atagtatatatcagttct |
218 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
11637296 |
atagtatatctcagttct |
11637279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11685050 - 11685258
Alignment:
| Q |
1 |
agtctagcagcatatttagctacattttttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| | ||||| |||||||| |||| ||| ||||| |
|
|
| T |
11685050 |
agtctagcagcatatttagccacattttttatacggctaaaatctcccatccattcccttatggaatcggcggtaagtccagttgttgtaggagaaaaca |
11685149 |
T |
|
| Q |
101 |
tccatagcgaactttcacgcaactgacttgatgaaaaagctagaaattcaaacttcttatcaccaataactatgccatttctaaggatggaaagaattct |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11685150 |
tccatagcgagttttcacgcaactgacttgatgagaaagccagaaattcaaacttcttaccaccaatatctatgccatttctaaggatggaaagaattct |
11685249 |
T |
|
| Q |
201 |
atagtatat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
11685250 |
atagtatat |
11685258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11689062 - 11689270
Alignment:
| Q |
1 |
agtctagcagcatatttagctacattttttatccggctaaaatctcccatccatttcctgatggaaccagcggtgtctccagttggtgtacgagcaaaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||| | ||||| |||||||| |||| ||| ||||| |
|
|
| T |
11689062 |
agtctagcagcatatttagccacattttttatacggctaaaatctcccatccattcccttatggaatcggcggtaagtccagttgttgtaggagaaaaca |
11689161 |
T |
|
| Q |
101 |
tccatagcgaactttcacgcaactgacttgatgaaaaagctagaaattcaaacttcttatcaccaataactatgccatttctaaggatggaaagaattct |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11689162 |
tccatagcgagttttcacgcaactgacttgatgagaaagccagaaattcaaacttcttaccaccaatatctatgccatttctaaggatggaaagaattct |
11689261 |
T |
|
| Q |
201 |
atagtatat |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
11689262 |
atagtatat |
11689270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University