View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3699_low_1 (Length: 453)

Name: NF3699_low_1
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3699_low_1
NF3699_low_1
[»] scaffold0576 (3 HSPs)
scaffold0576 (5-175)||(4358-4522)
scaffold0576 (225-312)||(3781-3868)
scaffold0576 (173-207)||(4050-4084)
[»] chr8 (3 HSPs)
chr8 (5-175)||(3733907-3734071)
chr8 (225-312)||(3733347-3733434)
chr8 (173-207)||(3733599-3733633)
[»] chr7 (3 HSPs)
chr7 (5-175)||(2752024-2752188)
chr7 (225-312)||(2752661-2752748)
chr7 (173-207)||(2752462-2752496)
[»] chr6 (4 HSPs)
chr6 (5-175)||(15359374-15359538)
chr6 (225-312)||(15358814-15358901)
chr6 (173-207)||(15359066-15359100)
chr6 (377-417)||(636998-637038)
[»] chr1 (3 HSPs)
chr1 (5-175)||(20264622-20264787)
chr1 (225-312)||(20264047-20264134)
chr1 (173-207)||(20264314-20264348)
[»] chr2 (3 HSPs)
chr2 (5-175)||(28658454-28658619)
chr2 (225-312)||(28657879-28657966)
chr2 (173-207)||(28658146-28658180)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-111)||(288870-288978)
[»] chr4 (1 HSPs)
chr4 (5-111)||(18198819-18198927)
[»] chr5 (1 HSPs)
chr5 (377-417)||(5525011-5525051)


Alignment Details
Target: scaffold0576 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 4522 - 4358
Alignment:
Q  5 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 104  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||||||||  |||       ||  |||| ||||||||| |||||||||||||||||    
T  4522 tgaagcttactttgaagatctctgcaacaacgattacaactgaaatagtgtc--atc-------tctgaaacgagacaatgggtatttcaaggagttaat 4432  T
Q  105 tatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 175  Q
    |||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  4431 tatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 4358  T

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Target: scaffold0576; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 3868 - 3781
Alignment:
Q  225 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 312  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  3868 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 3781  T

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Target: scaffold0576; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 4084 - 4050
Alignment:
Q  173 gaaaaagaaaagaataacattctaacctctccaat 207  Q
    |||||||||||||||||||||||||||||||||||    
T  4084 gaaaaagaaaagaataacattctaacctctccaat 4050  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 3734071 - 3733907
Alignment:
Q  5 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 104  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| |||||||||||||||||    
T  3734071 tgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaaggagttaat 3733981  T
Q  105 tatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 175  Q
    |||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  3733980 tatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 3733907  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 3733434 - 3733347
Alignment:
Q  225 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 312  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  3733434 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 3733347  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 3733633 - 3733599
Alignment:
Q  173 gaaaaagaaaagaataacattctaacctctccaat 207  Q
    |||||||||||||||||||||||||||||||||||    
T  3733633 gaaaaagaaaagaataacattctaacctctccaat 3733599  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 2752024 - 2752188
Alignment:
Q  5 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 104  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| |||||||||||||||||    
T  2752024 tgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaaggagttaat 2752114  T
Q  105 tatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 175  Q
    |||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  2752115 tatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 2752188  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 2752661 - 2752748
Alignment:
Q  225 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 312  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  2752661 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 2752748  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 2752462 - 2752496
Alignment:
Q  173 gaaaaagaaaagaataacattctaacctctccaat 207  Q
    |||||||||||||||||||||||||||||||||||    
T  2752462 gaaaaagaaaagaataacattctaacctctccaat 2752496  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 15359538 - 15359374
Alignment:
Q  5 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 104  Q
    |||| ||||||||||||||||||||||||||  ||||||| |||||| ||||  |||       ||  |||| ||||||||| |||||||||||||||||    
T  15359538 tgaagcttactttgaagatctctgcaacaacgattacaactgaaataatgtc--atc-------tctgaaacgagacaatgggtatttcaaggagttaat 15359448  T
Q  105 tatagaaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 175  Q
    |||||||||  | ||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  15359447 tatagaaaaaataagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 15359374  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 15358901 - 15358814
Alignment:
Q  225 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 312  Q
    |||||||||||||| |||||||| || |||||||||  |||| ||||||||||||||| || |||||||||| ||| |||||||||||    
T  15358901 tattaataaaaacagaactcgatgatagatttagctcccttacaaagattaagaacccacacaaaggttacaagaacagtcccaacaa 15358814  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 15359100 - 15359066
Alignment:
Q  173 gaaaaagaaaagaataacattctaacctctccaat 207  Q
    |||||||||||||||||||||||||||||||||||    
T  15359100 gaaaaagaaaagaataacattctaacctctccaat 15359066  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 636998 - 637038
Alignment:
Q  377 ctataacaaaataatcattgaaccattaatctcaaatctaa 417  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  636998 ctataacaaaataatcattcagccattaatctcaaatctaa 637038  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 20264787 - 20264622
Alignment:
Q  5 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 104  Q
    |||| |||||||||||||||||||||||||   ||||||| ||||||||||| | ||| |         ||| ||||||||| |||||||||||||||||    
T  20264787 tgaagcttactttgaagatctctgcaacaatgattacaactgaaatagtgtcatctccga---------aacgagacaatgggtatttcaaggagttaat 20264697  T
Q  105 tatag-aaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 175  Q
    ||||| ||||  ||||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  20264696 tatagaaaaaaatgagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 20264622  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 20264134 - 20264047
Alignment:
Q  225 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 312  Q
    |||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||| || |||||||| | ||| |||||||||||    
T  20264134 tattaataaaaacagaactcgataatagatttagctcccttacaaagattaagaacccacacaaaggttataagaacagtcccaacaa 20264047  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 20264348 - 20264314
Alignment:
Q  173 gaaaaagaaaagaataacattctaacctctccaat 207  Q
    |||||||||||||||||||||||||||||||||||    
T  20264348 gaaaaagaaaagaataacattctaacctctccaat 20264314  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 28658619 - 28658454
Alignment:
Q  5 tgaaacttactttgaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagttaat 104  Q
    |||| |||||||||||||||||||||||||   ||||||| |||||||||||  |||       ||  |||| ||||||||  |||||||||||||||||    
T  28658619 tgaagcttactttgaagatctctgcaacaatgattacaactgaaatagtgtc--atc-------tctgaaacgagacaatgagtatttcaaggagttaat 28658529  T
Q  105 tatag-aaaagttgagttattttaacatcaagatgcaacaaaattcacata---tgtcatctttaagtgcttgaa 175  Q
    ||||| ||||  ||||||||||||||||||| || |||||||| |||||||   |||||||||||||||||||||    
T  28658528 tatagaaaaaaatgagttattttaacatcaaaatacaacaaaactcacatattttgtcatctttaagtgcttgaa 28658454  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 28657966 - 28657879
Alignment:
Q  225 tattaataaaaacaaaactcgataatggatttagctttcttataaagattaagaaccctcataaaggttacaggaatagtcccaacaa 312  Q
    |||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||| || |||||||| | ||| |||||||||||    
T  28657966 tattaataaaaacagaactcgataatagatttagctcccttacaaagattaagaacccacacaaaggttataagaacagtcccaacaa 28657879  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 28658180 - 28658146
Alignment:
Q  173 gaaaaagaaaagaataacattctaacctctccaat 207  Q
    |||||||||||||||||||||||||||||||||||    
T  28658180 gaaaaagaaaagaataacattctaacctctccaat 28658146  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 288870 - 288978
Alignment:
Q  5 tgaaacttacttt--gaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagtta 102  Q
    |||||||||||||  |||||||| || ||| | | |||| |||||||||||||| | ||||||| |||  |||  ||||||||| ||||||||||| |||    
T  288870 tgaaacttactttttgaagatctttgtaactaaaattactacagaaatagtgtcatctccaagtcatctgaaatgagacaatgggtatttcaaggactta 288969  T
Q  103 attatagaa 111  Q
    |||||||||    
T  288970 attatagaa 288978  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 18198927 - 18198819
Alignment:
Q  5 tgaaacttacttt--gaagatctctgcaacaacagttacaacagaaatagtgtcgtatccaagttatcaaaaacaagacaatggttatttcaaggagtta 102  Q
    |||||||||||||  |||||||| || ||| | | |||| |||||||||||||| | ||||||| |||  |||  ||||||||| ||||||||||| |||    
T  18198927 tgaaacttactttttgaagatctttgtaactaaaattactacagaaatagtgtcatctccaagtcatctgaaatgagacaatgggtatttcaaggactta 18198828  T
Q  103 attatagaa 111  Q
    |||||||||    
T  18198827 attatagaa 18198819  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 5525051 - 5525011
Alignment:
Q  377 ctataacaaaataatcattgaaccattaatctcaaatctaa 417  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  5525051 ctataacaaaataaacattcaaccattaatctcaaatctaa 5525011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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