View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3699_low_3 (Length: 414)
Name: NF3699_low_3
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3699_low_3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 2927793 - 2928189
Alignment:
| Q |
18 |
atgtgcattcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927793 |
atgtgcattcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatg |
2927892 |
T |
|
| Q |
118 |
ctttggctctttgtcttcctgatggatgggtactaagaaaacctgtaaacataaaatcattgttatgtccgcttaactttcccagctcctcgtagacttt |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927893 |
ctttggctctttgtcttcctgatgaatgggtactaagaaaacctgtaaacataaaatcattgttatgtccgcttaactttcccagctcctcgtagacttt |
2927992 |
T |
|
| Q |
218 |
aggagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttga |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927993 |
aggagccacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttga |
2928092 |
T |
|
| Q |
318 |
gaacaaacataagcatatatttaacaaagaagacaacattgaatgacagaaaggaccattagaacacagcagatgcagcacagaaaaaagccatacc |
414 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928093 |
gaacaaacataagcatatatgtaacaaagaagacaacattgaatgacagaaaggaccattagaacacagcagatgcagcacagaaaaaagccatacc |
2928189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 2311475 - 2311091
Alignment:
| Q |
20 |
gtgcattcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311475 |
gtgcattcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgct |
2311376 |
T |
|
| Q |
120 |
ttggctctttgtcttcctgatggatgggtactaagaaaacctgtaaacataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttag |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2311375 |
ttggctctttgtcttcctgatggatgggtactaagaaaacctgtaaacataaaatcattgttatgtctgcttaactttcccagctcctcgtagactttag |
2311276 |
T |
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| Q |
220 |
gagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgaga |
319 |
Q |
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| || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
2311275 |
gtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacatgcaaattgtgaataaagtgggttgaga |
2311176 |
T |
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| Q |
320 |
acaaacataagcatatatttaacaaagaagacaacattgaatgacagaaaggaccattagaacacagcagatgcagcacagaaaaaagc |
408 |
Q |
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|||| ||||||||||||| | || ||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||| |
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| T |
2311175 |
acaagcataagcatatatgt----aatgagacaacattgaatgacagaagggaccattagatcatagcagatgcaggacagaaaaaagc |
2311091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 10173717 - 10173789
Alignment:
| Q |
231 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtga |
303 |
Q |
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|||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| || || ||||||||| |
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| T |
10173717 |
ggatcatagccagcggctgccattagtagaagcccaatgtaatccgcttcaaattcacacttgtaaattgtga |
10173789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 10173517 - 10173632
Alignment:
| Q |
31 |
aagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttg |
130 |
Q |
| |
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||||||||||||| | |||| ||| ||| |||||||||| ||||| | |||||||||||| | |||||||| |||| |||||| |||||| ||||||| |
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| T |
10173517 |
aagaatgaaatcattcaaccccacgcctgcctcttgcatctttatacaaaataagagcttcctgcattatctcaggtcgagccactgctttcgctctttc |
10173616 |
T |
|
| Q |
131 |
tcttcctgatggatgg |
146 |
Q |
| |
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| | | |||||||||| |
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| T |
10173617 |
tttacttgatggatgg |
10173632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 323
Target Start/End: Original strand, 1237932 - 1238024
Alignment:
| Q |
231 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaa |
323 |
Q |
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|||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1237932 |
ggatcatagccaactgctgccattagtagaagcccaatgtaatccgcttcaaattcaaacctgcaaattgtgaataaattggattgagaacaa |
1238024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 227 - 341
Target Start/End: Original strand, 29088860 - 29088974
Alignment:
| Q |
227 |
ccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaaca |
326 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||| ||||| ||||||| || || |
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| T |
29088860 |
ccgaggatcatagccagctgatgccattagtagaagcccaatgtaatcaacttcaaattcaaaactgcaaattgtgaatacattggattgagaataagca |
29088959 |
T |
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| Q |
327 |
taagcatatatttaa |
341 |
Q |
| |
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| || |||||||||| |
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| T |
29088960 |
tgagtatatatttaa |
29088974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 1175509 - 1175417
Alignment:
| Q |
231 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaa |
323 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
1175509 |
ggatcatagccagctgctgccatcagtagaagcccaatgtaatcagcttcatattcaaacctgcaaattgtgaataaattttgttgagaacaa |
1175417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 29088671 - 29088783
Alignment:
| Q |
26 |
tcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggct |
125 |
Q |
| |
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|||||||||||||||||| | || | ||| |||| ||||||||||||||| | | ||||||||||||||||||||||||| || ||| |||||| || |
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| T |
29088671 |
tcctaaagaatgaaatcattcaatcccacgtcttgttcttgcatcattatacaaagtaagagcttcttccattatcttaggccgaagcaacgctttgact |
29088770 |
T |
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| Q |
126 |
ctttgtcttcctg |
138 |
Q |
| |
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|||| |||||||| |
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| T |
29088771 |
ctttctcttcctg |
29088783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 1237727 - 1237847
Alignment:
| Q |
26 |
tcctaaagaatgaaatcagttaacctcactccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggct |
125 |
Q |
| |
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|||| ||||||||||||| | |||| ||| |||| |||| ||||||||||| || ||||||||| | |||||||| ||| |||||| ||||||||| |
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| T |
1237727 |
tcctgaagaatgaaatcattcaaccccacgccttcctctataatcattatataaaagaagagcttccttcattatctctggtcgagccaccgctttggct |
1237826 |
T |
|
| Q |
126 |
ctttgtcttcctgatggatgg |
146 |
Q |
| |
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|||| ||| |||||||||||| |
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| T |
1237827 |
ctttctctacctgatggatgg |
1237847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 327
Target Start/End: Original strand, 794359 - 794442
Alignment:
| Q |
244 |
ctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaacat |
327 |
Q |
| |
|
||||||| ||||||| |||||| || ||||| ||||||||||||||| |||||| |||||| ||||| |||||||||||||| |
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| T |
794359 |
ctgctgcgattagtataagcccaatgtaatcgtattcaaattcaaaccttcaaattatgaatatattggattgagaacaaacat |
794442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 23906457 - 23906529
Alignment:
| Q |
210 |
tagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaa |
282 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||| | ||| | || |||||||| || ||||||||||||| |
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| T |
23906457 |
tagactttaggtgccacccggggatcatagccagccgatgcaagtaatagaagccgaatgtaatcagcttcaa |
23906529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 43286724 - 43286845
Alignment:
| Q |
210 |
tagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgata--------taatcagcttcaaattcaaacctgcaaattgt |
301 |
Q |
| |
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||||||||||| |||| || |||||||||||||| | || |||||||||||||| ||| ||||||||||||||||||| ||| |||||| | |
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| T |
43286724 |
tagactttaggtgcaagtcggggatcatagccagccgatgtcattagtagaagccagattgcccaatgtaatcagcttcaaattcaatcctacaaattat |
43286823 |
T |
|
| Q |
302 |
g-aataaattgggttgagaaca |
322 |
Q |
| |
|
| |||||||||||||||||||| |
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| T |
43286824 |
gaaataaattgggttgagaaca |
43286845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 8083175 - 8083223
Alignment:
| Q |
28 |
ctaaagaatgaaatcagttaacctcactccttgctcttgcatcattata |
76 |
Q |
| |
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|||||||||||||||| | |||||||| ||| |||||| |||||||||| |
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| T |
8083175 |
ctaaagaatgaaatcattcaacctcacgcctcgctcttacatcattata |
8083223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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