View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3699_low_4 (Length: 389)
Name: NF3699_low_4
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3699_low_4 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 28047 - 28422
Alignment:
| Q |
14 |
cctttaacacaacaaaactataaagttaaaccaatgaaaacatcttttagtctaaaatcaaacataaacaagcttatataaacttaggagagtactgttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28047 |
cctttaacacaacaaaactataaagttaaaccaatgaaaacatcttttagtctaaaatgaaacataaacaagcttatataaacttaggagagtattgttg |
28146 |
T |
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| Q |
114 |
agtaaaactaaaaatttaaaataaatatcttaaagattcttcaacttcttgaactctactgttttgcctgacaaatgagcagaaaatgggagataattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28147 |
agtaaaactaaaaatttaaaataaatatcttaaagattcttcaactccttgaactctactgttttgcctgacaaatgagcagaaaatgggagataattaa |
28246 |
T |
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| Q |
214 |
cagggtactcaaagtgcagccacttaatatgaaatctataaagtcacctacataatatgtacttttataccattgatgttgatgcagccacaacttcatc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
28247 |
cagggtactcaaagtgcagccacttaatatgaaatctataaagtcacctacataatatgaacttttatatcattgatgttgatgcagccacaacttcatc |
28346 |
T |
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| Q |
314 |
agtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28347 |
agtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatc |
28422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 26395761 - 26396136
Alignment:
| Q |
14 |
cctttaacacaacaaaactataaagttaaaccaatgaaaacatcttttagtctaaaatcaaacataaacaagcttatataaacttaggagagtactgttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26395761 |
cctttaacacaacaaaactataaagttaaaccaatgaaaacatcttttagtctaaaatgaaacataaacaagcttatataaacttaggagagtactgttg |
26395860 |
T |
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| Q |
114 |
agtaaaactaaaaatttaaaataaatatcttaaagattcttcaacttcttgaactctactgttttgcctgacaaatgagcagaaaatgggagataattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |
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| T |
26395861 |
agtaaaactaaaaatttaaaataaatatcttaaagattcttcaactccttgaactctattgttttgcctgacagatgaacagaaaatgggagataattaa |
26395960 |
T |
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| Q |
214 |
cagggtactcaaagtgcagccacttaatatgaaatctataaagtcacctacataatatgtacttttataccattgatgttgatgcagccacaacttcatc |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
26395961 |
cagggtactcaatgtgcagccacttaatatgaaatctataaagtcacctacataatatgaacttttataccattgatattgatgcagcgacaacttcatc |
26396060 |
T |
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| Q |
314 |
agtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatc |
389 |
Q |
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| T |
26396061 |
agtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatc |
26396136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 303 - 389
Target Start/End: Original strand, 275446 - 275532
Alignment:
| Q |
303 |
acaacttcatcagtgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatc |
389 |
Q |
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| T |
275446 |
acaacttcatcagcgacaaatattgcttctttttcaacgattgcagccttcatttcacataatcacagaacaaaaatcacaacaatc |
275532 |
T |
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