View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3699_low_7 (Length: 301)

Name: NF3699_low_7
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3699_low_7
NF3699_low_7
[»] scaffold0428 (3 HSPs)
scaffold0428 (29-301)||(2315-2587)
scaffold0428 (83-298)||(15069-15278)
scaffold0428 (82-208)||(13771-13896)
[»] chr6 (11 HSPs)
chr6 (29-301)||(33258194-33258466)
chr6 (29-301)||(33414568-33414838)
chr6 (53-251)||(31564920-31565117)
chr6 (29-226)||(33269541-33269740)
chr6 (159-298)||(33293102-33293241)
chr6 (52-298)||(33395074-33395321)
chr6 (50-149)||(33384049-33384148)
chr6 (83-298)||(33278975-33279184)
chr6 (205-297)||(28872999-28873091)
chr6 (69-208)||(33406911-33407049)
chr6 (82-208)||(33280357-33280482)
[»] chr2 (1 HSPs)
chr2 (50-298)||(17447713-17447961)


Alignment Details
Target: scaffold0428 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 2315 - 2587
Alignment:
Q  29 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2315 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 2414  T
Q  129 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2415 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 2514  T
Q  229 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2515 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgc 2587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 83 - 298
Target Start/End: Complemental strand, 15278 - 15069
Alignment:
Q  83 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 182  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  15278 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 15184  T
Q  183 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 282  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  15183 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 15085  T
Q  283 tacagtccatcatccc 298  Q
    ||||||||||| ||||    
T  15084 tacagtccatcgtccc 15069  T

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Target: scaffold0428; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 13896 - 13771
Alignment:
Q  82 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 181  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  13896 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 13798  T
Q  182 tgctagtctcccggatttcttatcagc 208  Q
    |  || ||| ||||||||||| |||||    
T  13797 ttttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 33258194 - 33258466
Alignment:
Q  29 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258194 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 33258293  T
Q  129 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258294 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 33258393  T
Q  229 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258394 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgc 33258466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 29 - 301
Target Start/End: Original strand, 33414568 - 33414838
Alignment:
Q  29 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 128  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  33414568 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaa 33414666  T
Q  129 ttagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttga 228  Q
    |||||||||||||  ||| |||| || || ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||      
T  33414667 ttagaacaccaatacgtgcatcgtgaatg-tatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcc 33414765  T
Q  229 tgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccctgc 301  Q
    ||||||||||||||| |||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||||||    
T  33414766 tgagatatgcttgcgccttttcaagatcgccttccgtttcagcaagagctttcttacagtccatcatccctgc 33414838  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 31565117 - 31564920
Alignment:
Q  53 tgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgc 152  Q
    |||||||||||||| | |||||||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||| ||||||||     
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  153 gagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttca 251  Q
    || || ||||||||||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||||    
T  31565017 gaatg-tatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 31564920  T

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Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 33269541 - 33269740
Alignment:
Q  29 gaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaa 128  Q
    |||||||||||| ||  ||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  33269541 gaacctgtggac-aagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaa 33269639  T
Q  129 ttagaacaccaatgtgtgaatcgcgagtg---atatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttt 225  Q
    |||||||||| |||  || || | || ||   |||||||||||||||| ||||  ||||||||||  | || ||||||||||||||||||||||||||||    
T  33269640 ttagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagaccctttt 33269739  T

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Target: chr6; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 159 - 298
Target Start/End: Original strand, 33293102 - 33293241
Alignment:
Q  159 tatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcac 258  Q
    |||||||| |||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||  |||| ||||||| |  ||||||||||||||    
T  33293102 tatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcaccttttcaagatcac 33293201  T
Q  259 cttctgtttcggcacgagctttcttacagtccatcatccc 298  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  33293202 cttctgtttcagcatgagctttcttacagtccatcatccc 33293241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 298
Target Start/End: Original strand, 33395074 - 33395321
Alignment:
Q  52 ttgcattgcaagatcgtcaaccaactccttaaatttctcacttctg--ccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 149  Q
    |||||||| ||||||  ||||||||||||| ||| | |||||||||  ||||||||||||||||||| |||||||||||| ||||||   ||| ||| ||    
T  33395074 ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcat 33395173  T
Q  150 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 249  Q
    ||  | || ||| ||||||||||||||||  ||||||| || ||||||||||| ||||| ||||||||||||||| |  | || |||| ||| | |||||    
T  33395174 cgtcaatg-tatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggcctttt 33395272  T
Q  250 caagatcaccttctgtttcggcacgagctttcttacagtccatcatccc 298  Q
    ||||||||||||  ||||||||    ||||||||||||||||| |||||    
T  33395273 caagatcacctttagtttcggctaaggctttcttacagtccataatccc 33395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 33384049 - 33384148
Alignment:
Q  50 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 149  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||    
T  33384049 acttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaat 33384148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 83 - 298
Target Start/End: Original strand, 33278975 - 33279184
Alignment:
Q  83 aatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttct 182  Q
    ||||||| |||||||||| ||||||||||||||| ||| ||||||||||||||||  |||||||||||| || || |||||||| ||||||||||    |    
T  33278975 aatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatg-tatgtaccaattcttcctt----t 33279069  T
Q  183 gctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttct 282  Q
      |||  | ||||||||||| ||||| ||| |||||||||||||  | || |||||||||| ||||||| ||| |||||| ||||||||| | || || |    
T  33279070 agtagcttgccggatttcttgtcagctgataagagacccttttt-ctaaggtatgcttgcgccttttcatgataaccttcagtttcggcaagggcattat 33279168  T
Q  283 tacagtccatcatccc 298  Q
    ||||||||||| ||||    
T  33279169 tacagtccatcgtccc 33279184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 28873091 - 28872999
Alignment:
Q  205 cagcggatgagagaccctttttgatgagatatgcttgcggcttttcaagatcaccttctgtttcggcacgagctttcttacagtccatcatcc 297  Q
    |||| ||||||||||||||||   |||| ||||||| || |||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttcaagatcaccttctgtttcggcaagggctttcttacagtccatcatcc 28872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
Q  69 caaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccga 168  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||  ||||||| |||||| ||||| ||||  | ||| |  | | ||||||||||     
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaat-atatgtaccgg 33407009  T
Q  169 ttcttccttcttctgctagtctcccggatttcttatcagc 208  Q
    || |||| ||  |||||||||| | |||||||||||||||    
T  33407010 tttttccatcggctgctagtcttctggatttcttatcagc 33407049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 33280357 - 33280482
Alignment:
Q  82 aaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttc 181  Q
    |||||||||||||||||||| |||||| || |||| ||| ||||||| ||||| ||||||| |||||||| || || || |||| ||||| ||||||  |    
T  33280357 aaatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatg-taggtactgattcctccttcagc 33280455  T
Q  182 tgctagtctcccggatttcttatcagc 208  Q
    |  || ||| ||||||||||| |||||    
T  33280456 ttttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 50 - 298
Target Start/End: Complemental strand, 17447961 - 17447713
Alignment:
Q  50 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 149  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| |||| ||| ||| ||    
T  17447961 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat 17447862  T
Q  150 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagaga-ccctttttgatgagatatgcttgcggcttt 248  Q
    || || || ||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||| ||||||||  |||| |||||||||| ||||    
T  17447861 cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgccttt 17447763  T
Q  249 tcaagatcaccttctgtttcggcacgagctttcttacagtccatcatccc 298  Q
    |||||||||||||| ||||||||| | ||||||||||||||||| |||||    
T  17447762 tcaagatcaccttcagtttcggcaagggctttcttacagtccataatccc 17447713  T

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