View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3699_low_8 (Length: 292)
Name: NF3699_low_8
Description: NF3699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3699_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 8608737 - 8608982
Alignment:
| Q |
21 |
aagttcaaaatgtcatattttctgaaaacttgtaaccaaactagcaaaataaacagcaccaacattatacataaagaaactgaaattcataaacaaattg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8608737 |
aagttcaaaatgtcatattttctgaaaacttgtaacgaaactagcaaaataaacagcaccaacat--------aagaaactgaaattcataaacaaattg |
8608828 |
T |
|
| Q |
121 |
aataattaaaaggttctcaatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcag |
220 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8608829 |
aataagtaaaaggttttcaatcagaatcactttcctcatcagagtaacctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcag |
8608928 |
T |
|
| Q |
221 |
aaagtccacgaacacaaatgtttcatgttgctctttgtcatcaatcaaattctt |
274 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8608929 |
aaagtccacaaacacaaatgtttcatgttgctctttgtcatcaatcaaattctt |
8608982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 8569241 - 8569340
Alignment:
| Q |
139 |
aatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacgaacacaaa |
238 |
Q |
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|||| |||||||||| ||||||||||| | |||| || |||||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||| |
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| T |
8569241 |
aatccgaatcacttttctcatcagagtcacctttgttgatcttgttcatagcagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaa |
8569340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 8384117 - 8384012
Alignment:
| Q |
139 |
aatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacgaacacaaa |
238 |
Q |
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|||||||||||||||||||||||||| || | | | |||||||| ||| |||||||||| || ||||||||||| ||||||||||||| || ||||| |
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| T |
8384117 |
aatcagaatcactttcctcatcagagcaaccaatttggatcttgtttaaaacagattcaaagatgctctcaagctccatcagaaagtccacaaatacaaa |
8384018 |
T |
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| Q |
239 |
tgtttc |
244 |
Q |
| |
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|||||| |
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|
| T |
8384017 |
tgtttc |
8384012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 8544569 - 8544664
Alignment:
| Q |
145 |
aatcactttcctcatcagagtaatctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacgaacacaaatg |
240 |
Q |
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||||||||||| ||||||| ||| ||| || |||||||||| | ||||||||| || ||||||||||||||| ||||||||| |||||||||| |
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| T |
8544569 |
aatcactttccccatcagattaaccttggttgatcttgttcatggaagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatg |
8544664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 8575235 - 8575316
Alignment:
| Q |
145 |
aatcactttcctcatcagagtaatctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtc |
226 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||| || ||||||||| || ||||||||||||| || ||||| |
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| T |
8575235 |
aatcactttcctcatcagagtagcctttgttaatcttgttcttagaagattcaaagatgctctcaagctcctttagcaagtc |
8575316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 8580665 - 8580728
Alignment:
| Q |
177 |
atcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacgaacacaaatg |
240 |
Q |
| |
|
|||||||||| | ||||||||| || ||||||||||||||||||||||||| |||||||||| |
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| T |
8580665 |
atcttgttcatggaagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaatg |
8580728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 12527434 - 12527536
Alignment:
| Q |
139 |
aatcagaatcactttcctcatcagagtaatctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacgaacacaaa |
238 |
Q |
| |
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|||||||||||||||| ||| | |||||| |||| || ||||| |||||||||||| |||| || ||||||||||||||| |||||||| |||||||| |
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| T |
12527434 |
aatcagaatcactttcttcaccggagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaagctccttcaaaaagtccaaaaacacaaa |
12527533 |
T |
|
| Q |
239 |
tgt |
241 |
Q |
| |
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||| |
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|
| T |
12527534 |
tgt |
12527536 |
T |
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