View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3700_high_1 (Length: 395)
Name: NF3700_high_1
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 55245594 - 55245220
Alignment:
| Q |
9 |
cgaagaatattaattcatttactacacaaaccccactattattttttaaggtaacattaattctagtagctagtttttattattttagtgact----act |
104 |
Q |
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| T |
55245594 |
cgaacaatattaattcatttactacacaatccacactattattttt-aaggtaacattaattctagtagctagtttttattgttttagtgactgactact |
55245496 |
T |
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| Q |
105 |
atataattgtggtattggtgttgtgttatatagtagatatttgttagaaaaaacaacatatgaatacacaaaatttgttaacgtggtttggccaattttg |
204 |
Q |
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| T |
55245495 |
atataattgtggtattggtgttgtgttatatagtagatatttgttagaaaaaacaacatatgaatacacaaaatttgttaacgtggtttggccaattttg |
55245396 |
T |
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| Q |
205 |
cttaagggcaaagcgcatgcagttccttcgtattgaatgaccaagttgagcactttattgcacctgtgaaccttagcttatctgaagattcctttgaatt |
304 |
Q |
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| T |
55245395 |
cttaagggcaaagcgcatgcagttccttcgtattgaatgaccaagttgagcacttcattgcacctgtgaaccttagcttgtctgaagattcctttgaatt |
55245296 |
T |
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| Q |
305 |
gaattgaatgagaaatgggaggtgaagatggtatatgatataagtttgaaggattttcatcagactttgttgaatt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55245295 |
gaattgaatgagaaatgggaggtgaagatggtatatgatataagtttgaaggattttcatcagactttgttgaatt |
55245220 |
T |
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