View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3700_high_8 (Length: 241)

Name: NF3700_high_8
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3700_high_8
NF3700_high_8
[»] chr6 (1 HSPs)
chr6 (142-241)||(10578326-10578425)
[»] chr2 (2 HSPs)
chr2 (101-241)||(31267268-31267413)
chr2 (134-196)||(36658860-36658922)
[»] scaffold0219 (2 HSPs)
scaffold0219 (134-241)||(5558-5666)
scaffold0219 (134-179)||(2265-2310)
[»] chr4 (4 HSPs)
chr4 (134-241)||(48666138-48666246)
chr4 (101-167)||(49420388-49420454)
chr4 (128-189)||(12579695-12579756)
chr4 (134-196)||(45892339-45892397)
[»] chr7 (2 HSPs)
chr7 (126-196)||(12120394-12120464)
chr7 (134-241)||(23773830-23773938)
[»] scaffold0527 (2 HSPs)
scaffold0527 (134-241)||(2965-3075)
scaffold0527 (134-241)||(11028-11138)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 10578326 - 10578425
Alignment:
Q  142 taaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatccacgaacccacgta 241  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  10578326 taaaccacaaaagcaaaatccaacaatttaatacaaaagtggtaataaaagagaataaccctaaataaccactaccacggacaatccacgaatccacgta 10578425  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 31267413 - 31267268
Alignment:
Q  101 gagaaggaaatacaagactaaggagcaaggacatgacccagtaaaccacaaaagcaaaacccaacaat---ttaa-tacaaaagtggtaataaaagagaa 196  Q
    |||||| || ||||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||   |||| ||||||||||| ||||||||||||    
T  31267413 gagaagcaagtacaagattgaggagcaaggacttgacccagtaaaccactaaagcaaaacccaacaatatattaagtacaaaagtggcaataaaagagaa 31267314  T
Q  197 taaccctaaacaaccactaccacagacaatcc-acgaacccacgta 241  Q
     ||||||||||||||||||||||||||||||| ||||||| |||||    
T  31267313 caaccctaaacaaccactaccacagacaatccaacgaaccaacgta 31267268  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 36658922 - 36658860
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaa 196  Q
    ||||| ||||||||||||||| |||||||||||||| |||| |||| ||||||||||| ||||    
T  36658922 tgacctagtaaaccacaaaagtaaaacccaacaattcaatataaaaatggtaataaaaaagaa 36658860  T

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Target: scaffold0219 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 5558 - 5666
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-cga 232  Q
    |||||| | ||||||||||||||||||||||||||| | ||||||| || |||||| |||||| |  |||||||||||| ||||||  |||||||| |||    
T  5558 tgaccccgaaaaccacaaaagcaaaacccaacaattcagtacaaaaatgataataatagagaacagtcctaaacaaccattaccacgtacaatccagcga 5657  T
Q  233 acccacgta 241  Q
    |||||||||    
T  5658 acccacgta 5666  T

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Target: scaffold0219; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 2265 - 2310
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaa 179  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  2265 tgaccccgtaaaccacaaaagcaaaacccaactattcagtacaaaa 2310  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 48666246 - 48666138
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-cga 232  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| | |||||||||||||| |  ||| |||||||| ||||||  ||||| || |||    
T  48666246 tgacccagtaaaccacaaaagcaaaactcaacaattcagtacaaaaattgtaataaaagagaacagtccttaacaaccattaccacgtacaattcagcga 48666147  T
Q  233 acccacgta 241  Q
    |||||||||    
T  48666146 acccacgta 48666138  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 49420388 - 49420454
Alignment:
Q  101 gagaaggaaatacaagactaaggagcaaggacatgacccagtaaaccacaaaagcaaaacccaacaa 167  Q
    |||||| ||||| |||| | |||||||||||| ||||||| |||||||||||||||||||| |||||    
T  49420388 gagaagcaaatataagattgaggagcaaggacctgacccattaaaccacaaaagcaaaacctaacaa 49420454  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 12579756 - 12579695
Alignment:
Q  128 aggacatgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataa 189  Q
    ||||| ||||||| | |||||||||||||||||||||||||||  ||||||| |||||||||    
T  12579756 aggacctgacccaatgaaccacaaaagcaaaacccaacaatttggtacaaaaatggtaataa 12579695  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 45892339 - 45892397
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaa 196  Q
    ||||||||||||||||||||||||||| |||||    | ||||||| ||||||||||||||||    
T  45892339 tgacccagtaaaccacaaaagcaaaactcaaca----agtacaaaaatggtaataaaagagaa 45892397  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 12120464 - 12120394
Alignment:
Q  126 caaggacatgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaa 196  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||    
T  12120464 caaggacctgaaccagtaaaccacaaaagcaaaacccaataatttagtataaaagttgtaataaaagagaa 12120394  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 23773938 - 23773830
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-cga 232  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||  |||||||| ||| || |  |||||||||||| || |||   ||||||| |||    
T  23773938 tgacctagtaaaccacaaaagcaaaacccaataatttaatacaaaaagggtaataagagataacagtcctaaacaaccattatcacgtgcaatccagcga 23773839  T
Q  233 acccacgta 241  Q
    |||||||||    
T  23773838 acccacgta 23773830  T

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Target: scaffold0527 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 2965 - 3075
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaa--gtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-c 230  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||| |||||| || | |||||||||| |||||   |||||||| |    
T  2965 tgacccagtaaaccacaaaagcaaaaccaaacaattcagtacaaaaatatggtaataagagagaacaatcttaaacaaccattaccatgtacaatccagc 3064  T
Q  231 gaacccacgta 241  Q
    |||||||||||    
T  3065 gaacccacgta 3075  T

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Target: scaffold0527; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 11028 - 11138
Alignment:
Q  134 tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaa--gtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-c 230  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||| |||||| || | |||||||||| |||||   |||||||| |    
T  11028 tgacccagtaaaccacaaaagcaaaaccaaacaattcagtacaaaaatatggtaataagagagaacaatcttaaacaaccattaccatgtacaatccagc 11127  T
Q  231 gaacccacgta 241  Q
    |||||||||||    
T  11128 gaacccacgta 11138  T

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