View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3700_low_1 (Length: 446)
Name: NF3700_low_1
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 43210571 - 43210983
Alignment:
| Q |
18 |
tttaaaggagtgctttaatgtgctttgagaaaagaagaagaagaggatgacgattataggaacatgaatttattatttcgcaatagatagttgagaaatt |
117 |
Q |
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| T |
43210571 |
tttaaaggagtgctttaatgtgctttgagaaaaga---agaagaggacgacgattataggaacatgaatttattatttcgcaatagatagttgagaaatt |
43210667 |
T |
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| Q |
118 |
tagtatagaaacgtaagttacgtgagtttataaaacatgtttgatatgttttaagagctatgccaaagagtacgacgacatcgacaacaaaatttgtcga |
217 |
Q |
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| T |
43210668 |
tagtatagaaacgtaagttacgtgagtttataaaacaagtttgatatgttttaagagctatgccaaagagtacgacgacatcgacaacaaaattcgtcga |
43210767 |
T |
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| Q |
218 |
ccctttnnnnnnnnccaacaaaacatgggtaaaaatggtataataaagataaagtgttgaacatatgagtaattgcaattcagtaacaatgcttttcttc |
317 |
Q |
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| T |
43210768 |
ccctttaaaaaaaaccaacaaaacatgggtaaaaatggtataataaagataaagtgttgaacatatgagtaattgcaatttagtaacaatgcttttcgtc |
43210867 |
T |
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| Q |
318 |
ggttttcgtatgccatcgtttgtaccattcatcattctccatgttttaagtaggttatccggcaaaaatgccccaaacatataatgttttcaacttattt |
417 |
Q |
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| T |
43210868 |
ggttttcgtatgccatcgtttgtaccattcatcattctccatgttttaagtaggttatctggcgaaaaggctccaaacatataatgttttcaacttattt |
43210967 |
T |
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| Q |
418 |
taaagagcaatgcttc |
433 |
Q |
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| T |
43210968 |
taaagagcaatgcttc |
43210983 |
T |
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