View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3700_low_10 (Length: 247)
Name: NF3700_low_10
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 52911872 - 52911659
Alignment:
| Q |
16 |
acgaaaacggcagtttaacagtaatcaaatgctggtccttttcttgctcattttcccatatgagttaatattcggctaactaaagcttccttcttcccag |
115 |
Q |
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| T |
52911872 |
acgaaaacgacagtttaacagtagtcaaacgctggtccttttcttggtcattttcccatatgagttaatattcggctaactaaagcttccttcttcccag |
52911773 |
T |
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| Q |
116 |
aaacaggaagattgtgtcctgtaagataatattttaactccaccactgtcaaatccttcaactgcaaaacaagatcaaatgattcagtgtcaacaattaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52911772 |
aaacaggaagattgtgtcctgtaagataatattttaactccaccactgtcaaatccttcagctgcaaaacaagatcaaatgattcagtgtcaacaattaa |
52911673 |
T |
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| Q |
216 |
aaaagttagaacaa |
229 |
Q |
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|||||||| ||||| |
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| T |
52911672 |
aaaagttaaaacaa |
52911659 |
T |
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