View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3700_low_11 (Length: 241)
Name: NF3700_low_11
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_low_11 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0219 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0527 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 10578326 - 10578425
Alignment:
| Q |
142 |
taaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatccacgaacccacgta |
241 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
10578326 |
taaaccacaaaagcaaaatccaacaatttaatacaaaagtggtaataaaagagaataaccctaaataaccactaccacggacaatccacgaatccacgta |
10578425 |
T |
|
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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 31267413 - 31267268
Alignment:
| Q |
101 |
gagaaggaaatacaagactaaggagcaaggacatgacccagtaaaccacaaaagcaaaacccaacaat---ttaa-tacaaaagtggtaataaaagagaa |
196 |
Q |
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|||||| || ||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
31267413 |
gagaagcaagtacaagattgaggagcaaggacttgacccagtaaaccactaaagcaaaacccaacaatatattaagtacaaaagtggcaataaaagagaa |
31267314 |
T |
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| Q |
197 |
taaccctaaacaaccactaccacagacaatcc-acgaacccacgta |
241 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
31267313 |
caaccctaaacaaccactaccacagacaatccaacgaaccaacgta |
31267268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 36658922 - 36658860
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaa |
196 |
Q |
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||||| ||||||||||||||| |||||||||||||| |||| |||| ||||||||||| |||| |
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| T |
36658922 |
tgacctagtaaaccacaaaagtaaaacccaacaattcaatataaaaatggtaataaaaaagaa |
36658860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 5558 - 5666
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-cga |
232 |
Q |
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|||||| | ||||||||||||||||||||||||||| | ||||||| || |||||| |||||| | |||||||||||| |||||| |||||||| ||| |
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| T |
5558 |
tgaccccgaaaaccacaaaagcaaaacccaacaattcagtacaaaaatgataataatagagaacagtcctaaacaaccattaccacgtacaatccagcga |
5657 |
T |
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| Q |
233 |
acccacgta |
241 |
Q |
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||||||||| |
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| T |
5658 |
acccacgta |
5666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 2265 - 2310
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaa |
179 |
Q |
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|||||| ||||||||||||||||||||||||| ||| | ||||||| |
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| T |
2265 |
tgaccccgtaaaccacaaaagcaaaacccaactattcagtacaaaa |
2310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 48666246 - 48666138
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-cga |
232 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||||||| | |||||||||||||| | ||| |||||||| |||||| ||||| || ||| |
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| T |
48666246 |
tgacccagtaaaccacaaaagcaaaactcaacaattcagtacaaaaattgtaataaaagagaacagtccttaacaaccattaccacgtacaattcagcga |
48666147 |
T |
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| Q |
233 |
acccacgta |
241 |
Q |
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||||||||| |
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| T |
48666146 |
acccacgta |
48666138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 49420388 - 49420454
Alignment:
| Q |
101 |
gagaaggaaatacaagactaaggagcaaggacatgacccagtaaaccacaaaagcaaaacccaacaa |
167 |
Q |
| |
|
|||||| ||||| |||| | |||||||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
49420388 |
gagaagcaaatataagattgaggagcaaggacctgacccattaaaccacaaaagcaaaacctaacaa |
49420454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 12579756 - 12579695
Alignment:
| Q |
128 |
aggacatgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataa |
189 |
Q |
| |
|
||||| ||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
12579756 |
aggacctgacccaatgaaccacaaaagcaaaacccaacaatttggtacaaaaatggtaataa |
12579695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 45892339 - 45892397
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaa |
196 |
Q |
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||||||||||||||||||||||||||| ||||| | ||||||| |||||||||||||||| |
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| T |
45892339 |
tgacccagtaaaccacaaaagcaaaactcaaca----agtacaaaaatggtaataaaagagaa |
45892397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 12120464 - 12120394
Alignment:
| Q |
126 |
caaggacatgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaa |
196 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||| |
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| T |
12120464 |
caaggacctgaaccagtaaaccacaaaagcaaaacccaataatttagtataaaagttgtaataaaagagaa |
12120394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 23773938 - 23773830
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaagtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-cga |
232 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| ||| || | |||||||||||| || ||| ||||||| ||| |
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| T |
23773938 |
tgacctagtaaaccacaaaagcaaaacccaataatttaatacaaaaagggtaataagagataacagtcctaaacaaccattatcacgtgcaatccagcga |
23773839 |
T |
|
| Q |
233 |
acccacgta |
241 |
Q |
| |
|
||||||||| |
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| T |
23773838 |
acccacgta |
23773830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0527 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0527
Description:
Target: scaffold0527; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 2965 - 3075
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaa--gtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-c |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||| |||||| || | |||||||||| ||||| |||||||| | |
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| T |
2965 |
tgacccagtaaaccacaaaagcaaaaccaaacaattcagtacaaaaatatggtaataagagagaacaatcttaaacaaccattaccatgtacaatccagc |
3064 |
T |
|
| Q |
231 |
gaacccacgta |
241 |
Q |
| |
|
||||||||||| |
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|
| T |
3065 |
gaacccacgta |
3075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0527; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 11028 - 11138
Alignment:
| Q |
134 |
tgacccagtaaaccacaaaagcaaaacccaacaatttaatacaaaa--gtggtaataaaagagaataaccctaaacaaccactaccacagacaatcca-c |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||| |||||| || | |||||||||| ||||| |||||||| | |
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|
| T |
11028 |
tgacccagtaaaccacaaaagcaaaaccaaacaattcagtacaaaaatatggtaataagagagaacaatcttaaacaaccattaccatgtacaatccagc |
11127 |
T |
|
| Q |
231 |
gaacccacgta |
241 |
Q |
| |
|
||||||||||| |
|
|
| T |
11128 |
gaacccacgta |
11138 |
T |
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