View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3700_low_4 (Length: 353)
Name: NF3700_low_4
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 43488105 - 43488384
Alignment:
| Q |
1 |
tcaatgcatgaagcaaattttatttctgttataagattggaaatatctaaaatacattgaaaaagccactgactaaa-tacaaagtattaaaaaccctct |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43488105 |
tcaatgcatgaagcaaattttatttctgttataagattggaaatatctaaaatacattgaaaaagccactgactaaaatacaaagtattaaaaaccctct |
43488204 |
T |
|
| Q |
100 |
ccatcaaaaagaaagacaaagaactcacacacggttcaacttgatccttcaataaaaactatgatagtgattgggagagagacctaaaaaaccttatact |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43488205 |
ccatcaaaaagaaagacaaagaactcacacacggttcaacttgatccttcaataaaaactatgatagtgatagggagagagacctaaaaaaccttatact |
43488304 |
T |
|
| Q |
200 |
cggatcaaaaggtatgactttagggttatgttatcttgatcaaaccctaaagactctgaggagtagtcactagtcagtag |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43488305 |
cggatcaaaaggtatgactttagggttatgttatcttgatcaaaccctaaagactctgaggagtagtcactagtcagtag |
43488384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University