View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3700_low_5 (Length: 295)
Name: NF3700_low_5
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_low_5 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 30618 - 30882
Alignment:
| Q |
20 |
atgacctataattttttgacttgaaaattacttgggtgtcttttggtttttgtgtgtaaatagtagtagagctggaaataaacacataggtggtgtttgt |
119 |
Q |
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| T |
30618 |
atgacctataattttttgacttgaaaattacttgggtgtcttttggtttttgtgtttaaatagtagtagagctggaaataaacacataggtggtgtttgt |
30717 |
T |
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| Q |
120 |
attttatagttcaaataacacaactgcatgtgtgttaattacaggtgtattttgatgttcattttgaaaagtgggttagtatgatttgaaatttgtggtt |
219 |
Q |
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| T |
30718 |
attttatagttcaaataacacaactgcatgtgtgttaattacaggtgtattttgatgttcattttgaaaagtgggttagtatgatttgaaatttgtgttt |
30817 |
T |
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| Q |
220 |
cctgtttgatggttatgtgttaacaagaaatgatttttgacattaaaattactacggtgtcctttg |
285 |
Q |
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| T |
30818 |
cct-tttgatggttatgtgttaacaagaaatgatttttgacattaaaatcactacggtgtcctttg |
30882 |
T |
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Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 269
Target Start/End: Complemental strand, 48882986 - 48882788
Alignment:
| Q |
72 |
tgtgtaaatagtagtagagctggaaataaacacataggtggtgtttgtattttatagttcaaataacacaa-ctgcatgtgtgt--taattaca-ggtgt |
167 |
Q |
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| T |
48882986 |
tgtgtaaatagtagaagagcta-aaataaacacatagtgtgtgcttgttttttggtgttcaaataacgcaaactgcatgtgtgtgttaattacaaggtgt |
48882888 |
T |
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| Q |
168 |
attttgatgttcattttgaaaagtgggttagtatgatttgaaatttgtggttcctgtttgatggttatgtgttaacaagaaatgatttttgacattaaaa |
267 |
Q |
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| T |
48882887 |
attttaatgttcattttgaaatgtgggttagtatgatttgaaatttttagttcctatttgatggt--tttgttaacaagaaatgatttttgacatcaaaa |
48882790 |
T |
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