View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3700_low_8 (Length: 286)

Name: NF3700_low_8
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3700_low_8
NF3700_low_8
[»] chr6 (7 HSPs)
chr6 (46-269)||(10578656-10578886)
chr6 (179-243)||(19633344-19633408)
chr6 (178-244)||(6424136-6424202)
chr6 (174-241)||(7993298-7993365)
chr6 (185-243)||(6602488-6602546)
chr6 (186-244)||(6433085-6433143)
chr6 (197-243)||(6437149-6437195)
[»] chr7 (3 HSPs)
chr7 (179-237)||(15091350-15091408)
chr7 (179-244)||(10168807-10168872)
chr7 (179-244)||(10176332-10176397)
[»] chr8 (1 HSPs)
chr8 (179-240)||(32152209-32152270)
[»] chr5 (2 HSPs)
chr5 (182-269)||(20477197-20477284)
chr5 (182-244)||(17205955-17206017)
[»] chr1 (2 HSPs)
chr1 (179-233)||(19467185-19467239)
chr1 (179-244)||(33161432-33161497)
[»] chr4 (5 HSPs)
chr4 (179-232)||(1524075-1524128)
chr4 (197-240)||(1547469-1547512)
chr4 (185-240)||(6007668-6007723)
chr4 (197-240)||(12126883-12126926)
chr4 (195-240)||(2367687-2367732)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 46 - 269
Target Start/End: Original strand, 10578656 - 10578886
Alignment:
Q  46 gaaacgctttctcata---tcttcttctatttgcgg----agctctcaccatgaaaaggaagaaaatggttgagaatttacctgatgactgttgggaata 138  Q
    ||||||||||||||||   |||||||||||||||||     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10578656 gaaacgctttctcatatcttcttcttctatttgcggcgctcgctctcaccatgaaaagaaagaaaatggttgagaatttacctgatgactgttgggaata 10578755  T
Q  139 tattttgaaattcttggttaaggaaaacggtggttactatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattc 238  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578756 tattttgaaatacttcgttaaggaaaacggtggttactatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattc 10578855  T
Q  239 tcactcgaggtctatccctcaagagtccctt 269  Q
    |||||||| ||||||||||||||||||||||    
T  10578856 tcactcgacgtctatccctcaagagtccctt 10578886  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 19633408 - 19633344
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcact 243  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||  ||||||||||||||||    
T  19633408 ttgaattctctatccctcgtctccaaacagttcctctcaataaccaattgtctcctattctcact 19633344  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 6424202 - 6424136
Alignment:
Q  178 tttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 244  Q
    |||||||||||| || |||||||||||||| ||||||||| ||||||||  ||||||||||||||||    
T  6424202 tttgaattctctttccctcgtctccaaacagttcctctccgtaaccaactctctcctattctcactc 6424136  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 7993298 - 7993365
Alignment:
Q  174 actatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctca 241  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| |||| | |||||| |||||||    
T  7993298 actacttgaattctttatctctcgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 6602488 - 6602546
Alignment:
Q  185 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcact 243  Q
    |||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  6602488 tctctatccctcgtctccaaacatttcctctccgtcaccaactgtctcctattctcact 6602546  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 6433143 - 6433085
Alignment:
Q  186 ctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 244  Q
    ||||||| |||||||||||| | ||||||||| | ||||||  ||||||||||||||||    
T  6433143 ctctatccctcgtctccaaatagttcctctccgtcaccaaccatctcctattctcactc 6433085  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 6437195 - 6437149
Alignment:
Q  197 gtctccaaacaattcctctccataaccaacagtctcctattctcact 243  Q
    ||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcctgttctcact 6437149  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 15091350 - 15091408
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctatt 237  Q
    ||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||    
T  15091350 ttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctatt 15091408  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 10168807 - 10168872
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 244  Q
    |||||||||||||| || ||||||||||| ||||||||||| ||||||| ||| | ||| ||||||    
T  10168807 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10168872  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 10176332 - 10176397
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 244  Q
    |||||||||||||| || ||||||||||| ||||||||||| ||||||| ||| | ||| ||||||    
T  10176332 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10176397  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 32152270 - 32152209
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 240  Q
    |||||||| || || |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  32152270 ttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 20477197 - 20477284
Alignment:
Q  182 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgaggtctatccctcaagagtccctt 269  Q
    ||||||||||| | |||||||||||| |||||||| ||||| ||   ||||||||||||||||   ||| ||||||||| ||||||||    
T  20477197 aattctctatcccgcgtctccaaacagttcctctctataacaaattctctcctattctcactcactgtcaatccctcaacagtccctt 20477284  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 17206017 - 17205955
Alignment:
Q  182 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 244  Q
    ||||||||||| |||||||||||||| || ||||| || ||| ||||| ||| ||||||||||    
T  17206017 aattctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactc 17205955  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 19467185 - 19467239
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcc 233  Q
    ||||||||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  19467185 ttgaattctctttcccttgtctccaaacaattcctctcaataaccaaccgtctcc 19467239  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 33161497 - 33161432
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 244  Q
    |||||||||||||| |||||||||||||| || |||||||| || || ||||| | ||||||||||    
T  33161497 ttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactc 33161432  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 1524075 - 1524128
Alignment:
Q  179 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctc 232  Q
    ||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||||    
T  1524075 ttgaattctctctctttggtctctaaacaattcctctccattaccaacagtctc 1524128  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  197 gtctccaaacaattcctctccataaccaacagtctcctattctc 240  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 6007723 - 6007668
Alignment:
Q  185 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 240  Q
    ||||| || |||||||| ||||| ||||||||||| ||||||||||||| ||||||    
T  6007723 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 12126926 - 12126883
Alignment:
Q  197 gtctccaaacaattcctctccataaccaacagtctcctattctc 240  Q
    |||||||||||||| |||||||| |||||| |||||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctc 12126883  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 2367687 - 2367732
Alignment:
Q  195 tcgtctccaaacaattcctctccataaccaacagtctcctattctc 240  Q
    |||||||||||||||| |||||||| |||||| |||||| ||||||    
T  2367687 tcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

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