View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3700_low_9 (Length: 278)
Name: NF3700_low_9
Description: NF3700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3700_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 34316321 - 34316065
Alignment:
| Q |
7 |
acatcatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgtaacaccccctcgtccatcttttttcgg |
106 |
Q |
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| T |
34316321 |
acattatcaagtgttgttagaaatatcatggaattttagtcaataaaatcaaaatactatgtatatatattgtaacaccccctcgtccatcttttttcgg |
34316222 |
T |
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| Q |
107 |
accaagaatgttacttgtaggtactgactggtacggaaaaaagagctgcgagaggaattttacacataatttgaagg-nnnnnnngttatgaataaaaga |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
34316221 |
accaagaatgttacttgtaggtactgactggtccggaaaaaagagctgcgagaggaatgttacacataatttgaaggaaaaaaaagttatgaataaaaga |
34316122 |
T |
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| Q |
206 |
acgtactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaac |
262 |
Q |
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| T |
34316121 |
acgtactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaac |
34316065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 38953323 - 38953375
Alignment:
| Q |
210 |
actaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaac |
262 |
Q |
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| T |
38953323 |
actaatgacaggaagatccatctcaagtccaacatgctcaagaagtttgaaac |
38953375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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