View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_high_10 (Length: 427)
Name: NF3701_high_10
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 32959135 - 32958755
Alignment:
| Q |
18 |
actacttcccattatgaccctccctttttatgcaaatgtccctcctctcaacaatatccacatcctctacgactgttacatcatgcatcagttgtatgaa |
117 |
Q |
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| T |
32959135 |
actacttcccattatgaccctccctttttatgcaaatgtccctcctctcaacaatatccacatcctctacgactgttacgtcatgcatcagttgtatgaa |
32959036 |
T |
|
| Q |
118 |
ccatgagatttgaaaatagaatcatttctttttctctaaccccaacggttcttaccactaatgcaacaacggtagaggatgcgggtttgaaatataaagt |
217 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32959035 |
ccgtgagatttgaaaatagaataatttctttttctctaaccccaacggttcttaccactaatgcaacaacgatagaggatgcgggtttgaaatataaagt |
32958936 |
T |
|
| Q |
218 |
agctgacaaaatatgacatagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaattt |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32958935 |
agctgacaaaatgtgacatagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaattt |
32958836 |
T |
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| Q |
318 |
ctgtcgagcaacatgtttggtttcctgtcatggttttagagtgttagtttcaggctgttctgactgctagtttggcctatg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
32958835 |
ctgtcgagcaacatgtttggtttcctgtcatggttttagagtgttagtttcaggctgttgtgactgctagtttggcttatg |
32958755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 49729760 - 49729865
Alignment:
| Q |
234 |
catagttaattaacaaatttgttgtgttttatggaatgtgacaaggcagcaacaacgtattttgggggagatgcgtcacaatttctgtcgagcaacatgt |
333 |
Q |
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|||| |||| |||||||||||||||| ||| ||||| |||||||| |||| || ||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
49729760 |
cataattaaataacaaatttgttgtgctttgtggaacgtgacaagacagcgacggcgtgttttgggggagatgcgtcacaatttccatcgagcaacatgt |
49729859 |
T |
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| Q |
334 |
ttggtt |
339 |
Q |
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|||||| |
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| T |
49729860 |
ttggtt |
49729865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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