View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_high_11 (Length: 390)
Name: NF3701_high_11
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 369
Target Start/End: Original strand, 45712490 - 45712852
Alignment:
| Q |
7 |
gaatcaatgtcaattacctgcagcaggaaaggagactggtactctatccaatctactcattatgaaaacatcacttattgtgatttcaatagcattttta |
106 |
Q |
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| T |
45712490 |
gaatcaatgtcaattacctgcagcaggaaaggagactggtactctatccaatctgctcgttatgaaaacatcacttattgtgatttcaatagcattttta |
45712589 |
T |
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| Q |
107 |
gtagtcattgtggtttcaatatttgtcatctttcgtttgaggtcccagaagaagcagttagatgatgaacaccattcttctatgatttcaacattccatg |
206 |
Q |
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| T |
45712590 |
gtagtcattgtggtttcaatatttgtcatctttcgtttgaagtcccagaagaagcagttagatgatgaacaccattcttctatgatttcaacattccatg |
45712689 |
T |
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| Q |
207 |
cgcaggcctccaaaaaatatgttaagcctcctgtagtttatgtgaaaaccaaaagcttggccgaacattatgatcccgaaagtcctaagcatgatcgcca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45712690 |
cgcaggcctccaaaaaatatgttaagcctcctgtagtttatgtgaaaaccaaaagcttggccgaacattatgatcccgaaagtcctaagcatgatcgcca |
45712789 |
T |
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| Q |
307 |
cagtcatggacattccaaaaagggggaacaaggcaagcttatattccttaggcaggatggaat |
369 |
Q |
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| T |
45712790 |
cagtcatggacattccaaaaagggggaacaaggcaagcttatattccttaggcaggatggaat |
45712852 |
T |
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