View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_high_19 (Length: 248)
Name: NF3701_high_19
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_high_19 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 248
Target Start/End: Complemental strand, 55989177 - 55988978
Alignment:
| Q |
49 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaccctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
148 |
Q |
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| T |
55989177 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaacctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
55989078 |
T |
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| Q |
149 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctcgtctgc |
248 |
Q |
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| T |
55989077 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataataaaatacgtcacaagaattcaccactggtcgagcctgacatctcgtctgc |
55988978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 49 - 242
Target Start/End: Complemental strand, 55325158 - 55324972
Alignment:
| Q |
49 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaccctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
148 |
Q |
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| T |
55325158 |
tgttaaagttgaacaaattcatctacgaagttctgaagaaggttcaccctgacattgctatatctgccggggctgtgga-at--tgatgaacactatctt |
55325062 |
T |
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| Q |
149 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctc |
242 |
Q |
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| T |
55325061 |
aacagacatgatgtt-gaagcttgctcagaaagct---tcgaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacatctc |
55324972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 55972918 - 55972735
Alignment:
| Q |
49 |
tgttaaagttgaacagatacatctaccaagttctgaagaaggtgcaccctgacattgctatatctgctgaggccattaatatgatgatgaacactatctt |
148 |
Q |
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|||||||||| |||| |||||||||| ||||||| |||||||| || |||||||||||||| |||| ||| ||| | || |||||||||||| | | |
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| T |
55972918 |
tgttaaagtttaacaaatacatctactaagttcttaagaaggttcatcctgacattgctatctctggtgaagccctggat---atgatgaacactcttat |
55972822 |
T |
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| Q |
149 |
aacagacatgatttttgaagcttgctcagaaagctgcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacat |
239 |
Q |
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| T |
55972821 |
aacagacatga-tgttgaagcttgctcagaaa---gcttccaagcataacaaaatacgtcacaagaattcaccactggtcgagcctgacat |
55972735 |
T |
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