View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_high_20 (Length: 245)
Name: NF3701_high_20
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 10503041 - 10503231
Alignment:
| Q |
39 |
tgtagaatttttcctataatagattctcatgatatagattttattgtcttatcttatgtttataataatatgttgttttctcaatttcttgttctaaact |
138 |
Q |
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| T |
10503041 |
tgtagaatttttcctataatagattctcatgatatagattttattgtgttatcttatgtttataatatt----tgttttctcaatgtcttgttctaaact |
10503136 |
T |
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| Q |
139 |
gatgaaatgaaacttgttggtgatctagaacatgtacaatttaggggctaggtcattttggatacacaacacagggccaagtggttgcactccta |
233 |
Q |
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| T |
10503137 |
gatgaaacaaaacttgctggtgatctagaacatatacaatttaggggctaggtcattttggatacacagcacagtaccaagtggttgcactccta |
10503231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 10508621 - 10508774
Alignment:
| Q |
62 |
ttctcatgatatagattttattgtcttatcttatgtttataataatatgttgttttctcaatttcttgttctaaactgatgaaatgaaacttgttggtga |
161 |
Q |
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| T |
10508621 |
ttctcatgatactaatttcattatcttatcctatgtttataa---tatgttgatttctcaatttctttttctaaactgatgaaatgaaatttgctggtca |
10508717 |
T |
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| Q |
162 |
tctagaacatgtacaatttaggggctaggtcattttggatacacaacacagggccaa |
218 |
Q |
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| T |
10508718 |
tttagaacatatataatttaggtgcaagatcattttggatacacggcacaggaccaa |
10508774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 10485628 - 10485745
Alignment:
| Q |
103 |
ataatatgttgttttctcaatttcttgttctaaactgatgaaatgaaacttgttggtgatctagaacatgtacaatttaggggctaggtcattttggata |
202 |
Q |
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| T |
10485628 |
ataatttgttgatttctcaatttattgttctcaattgatgaca-----cttattggtgatctagaacatacacagtttaggggccagatcattttggata |
10485722 |
T |
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| Q |
203 |
cacaacacagggccaagtggttg |
225 |
Q |
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| T |
10485723 |
cacaacacagggccaattggttg |
10485745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 10500115 - 10500182
Alignment:
| Q |
143 |
aaatgaaacttgttggtgatctagaacatgtacaatttaggggctaggtcattttggatacacaacac |
210 |
Q |
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| T |
10500115 |
aaatgcaacttattggtgatctagaacatatacaatttaggagccaggtcattttggatacacaacac |
10500182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 10545646 - 10545606
Alignment:
| Q |
173 |
tacaatttaggggctaggtcattttggatacacaacacagg |
213 |
Q |
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| T |
10545646 |
tacaatttgggggctagatcattttggatacacaacacagg |
10545606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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