View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_high_21 (Length: 244)
Name: NF3701_high_21
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 16965904 - 16965696
Alignment:
| Q |
18 |
ttcttgaacctttttactgtaataatctaaaatcatgacaaatatttttgttataataatgttttaatttacatttcacagtgcaagtcacctacgtcgc |
117 |
Q |
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| T |
16965904 |
ttcttgaacctttttactgtaataatctaaaatcatgacaaatatttttgttataataatgttttaatttacatttcacagtgcaagtcacctacgtcgc |
16965805 |
T |
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| Q |
118 |
atccggcttgtaacttttgatgctgctgatagcctttcagaaaaaggattttttgaaggcatgaagaaactttcgatgatggaggagctcgaaatttcat |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||| ||||||||||||||||||| |
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| T |
16965804 |
atccgggttgtaacttttgatgctgctgatagcctttcagaaaaaggatttattgaaggcataaaaaaactttcgatgatagaggagctcgaaatttcat |
16965705 |
T |
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| Q |
218 |
atcccttca |
226 |
Q |
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||||||||| |
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| T |
16965704 |
atcccttca |
16965696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 16955306 - 16955121
Alignment:
| Q |
37 |
taataatctaaaatcatgacaaatatttttgttataataatgttttaatttacatttcacagtgcaagtcacctacgtcgcatccggcttgtaacttttg |
136 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||| || |
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| T |
16955306 |
taataatctaaaatcatgactactatttttgttataataatgttttaatttacatttctcagtgcaagtcacctgcgttgcatccggcttgtagcttgtg |
16955207 |
T |
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| Q |
137 |
atgctgctgatagcctttcagaaaaaggattttttgaaggcatgaagaaactttcgatgatggaggagctcgaaatttcatatccc |
222 |
Q |
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|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||| ||| ||||||| |
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| T |
16955206 |
atgctgctgataacctttcagaaaaaggatttattggaggcatgaagaaactttcgatgatagaggagcttgaagttttatatccc |
16955121 |
T |
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