View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3701_low_1 (Length: 898)
Name: NF3701_low_1
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6322255 - 6321919
Alignment:
| Q |
1 |
ttacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6322255 |
ttacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagta |
6322156 |
T |
|
| Q |
101 |
cacttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6322155 |
tacttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtat |
6322056 |
T |
|
| Q |
201 |
ctattagttagtcctagcaatatattttcatagaataaataaaaatattacagatcatttgcaatgctcttattttgagcagttaatcagtctgcatgga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6322055 |
ctattagttagtcctagcaatatattttcatagaataaataaaaatattacagatcatttgcaatgctcttattttgagcagttaatcagtctgcgtgga |
6321956 |
T |
|
| Q |
301 |
tgactgatgaagaacttggaagagagatggttgctgg |
337 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| ||||||| |
|
|
| T |
6321955 |
tgactgatgaagaatttgcaagggagatgattgctgg |
6321919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6275388 - 6275182
Alignment:
| Q |
1 |
ttacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6275388 |
ttacaatctgcaattacattacaattcaataagccagaatttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagta |
6275289 |
T |
|
| Q |
101 |
cacttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtat |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
6275288 |
cacttagcaaacttagccctataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccacctaaagtcattaaaggtat |
6275189 |
T |
|
| Q |
201 |
ctattag |
207 |
Q |
| |
|
| ||||| |
|
|
| T |
6275188 |
ccattag |
6275182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6332839 - 6332493
Alignment:
| Q |
1 |
ttacaatctgcaattacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagta |
100 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| ||||||| ||||| | ||||| ||||| || ||||| ||| ||||||| ||| |||||||||||| | |
|
|
| T |
6332839 |
ttacgatctgcacttacattacaattcaatcagccagagtttaacacttttgaagatgtccgttcattatatcatggtggaattgaattacctactaatg |
6332740 |
T |
|
| Q |
101 |
cacttagcaaacttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtat |
200 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| |||||||| || ||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |
|
|
| T |
6332739 |
cacttagcaaaattagccccataccagtgttccaggaactcctcagaactgatggtgaatcggccctaaagtttccacgacctaaagtggttgaaggtat |
6332640 |
T |
|
| Q |
201 |
ctattag----------ttagtcctagcaatatattttcatagaataaataaaaatattacagatcatttgcaatgctcttattttgagcagttaatcag |
290 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6332639 |
ctattagaaacacatgttcagtcctagcaatatattttcatagaataaataaaaatatcacggatcatttgaaatgctcttattttgagcagttaatcag |
6332540 |
T |
|
| Q |
291 |
tctgcatggatgactgatgaagaacttggaagagagatggttgctgg |
337 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| |||||| ||||||| |
|
|
| T |
6332539 |
tctgcatggatgactgatggagaatttgcaagggagatgattgctgg |
6332493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 253 - 337
Target Start/End: Complemental strand, 6289621 - 6289537
Alignment:
| Q |
253 |
gatcatttgcaatgctcttattttgagcagttaatcagtctgcatggatgactgatgaagaacttggaagagagatggttgctgg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||| |
|
|
| T |
6289621 |
gatcatttgcaatgctcttattttgagcagttaatcagtctggatggatgactgatgaagaatttacaagagagatgattgctgg |
6289537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 270 - 389
Target Start/End: Complemental strand, 6457644 - 6457525
Alignment:
| Q |
270 |
ttattttgagcagttaatcagtctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaacccttgtgtgattcgccttctacaag |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||| |||| |
|
|
| T |
6457644 |
ttattttgagcagttagcaagtctgcatggatgacagatgaagaatttggaagagagatggttgctggtgtaaatcctaatgtgattcgccttcttcaag |
6457545 |
T |
|
| Q |
370 |
taagtttcaaatctattctt |
389 |
Q |
| |
|
|| || ||||| ||||||| |
|
|
| T |
6457544 |
tatgtaccaaatgtattctt |
6457525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 6363918 - 6363815
Alignment:
| Q |
110 |
aacttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtatctattagtt |
209 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||||||||||||| |||| || ||||||||||| || ||||||||||||||| | ||||| || |
|
|
| T |
6363918 |
aacttagcccaataccattgttcaaggaacttttccgaactgatggtgaagcggcacttaagtttccaccaccaaaagtgattcaaggtttatattaatt |
6363819 |
T |
|
| Q |
210 |
agtc |
213 |
Q |
| |
|
|||| |
|
|
| T |
6363818 |
agtc |
6363815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 6451436 - 6451351
Alignment:
| Q |
289 |
agtctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaacccttgtgtgattcgccttctacaagtaagt |
374 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| ||||||| ||||| ||| ||||||||| ||||| ||||||||| |
|
|
| T |
6451436 |
agtctgcatggaatactgatgaagaatttggaagagagatgcttgctggtgtaaatcctaatgtgattcgtcttcttcaagtaagt |
6451351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 6353111 - 6353026
Alignment:
| Q |
121 |
ataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtatctatta |
206 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||||| || || ||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
6353111 |
ataccattgttcaaggaacttttccgatctgatggtgaacaagcacttaagtttccaccaccaaaagtgattcaaggtatatatta |
6353026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 7460017 - 7459920
Alignment:
| Q |
113 |
ttagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgattcaaggtatctattagtta |
210 |
Q |
| |
|
||||||| |||||||| ||||| ||||| || ||||||||||||||| | | || ||||||||||| || |||||| |||||||||| ||||||||| |
|
|
| T |
7460017 |
ttagcccaataccattgttcaaagaactttttcgaactgatggtgaagctgtacttaagtttccaccaccgaaagtggttcaaggtatatattagtta |
7459920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 6263873 - 6263800
Alignment:
| Q |
270 |
ttattttgagcagttaatcagtctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaa |
343 |
Q |
| |
|
|||||||||| ||| | | |||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||| |
|
|
| T |
6263873 |
ttattttgagtagtgagtaagtctgcatggatgactgatgatgaatttggaagagagattcttgctggtgtaaa |
6263800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 7471694 - 7471517
Alignment:
| Q |
14 |
ttacattacaactcaataagccagaatttaatagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaact |
113 |
Q |
| |
|
||||||||||||||||||| || || ||||| | |||||| ||| ||||| | || |||||||| ||||| | |||||| | ||| ||||| | |
|
|
| T |
7471694 |
ttacattacaactcaataaccccgagtttaacacctttgaagatacacgatctctctacgatggtggaattaagcttcctactgatgtactaagcaagat |
7471595 |
T |
|
| Q |
114 |
tagccccataccatttttcaaggaactcttccgaactgatggtgaatcggccctaaagtttccaccgcctaaagtgat |
191 |
Q |
| |
|
|||||| |||||||| ||||| |||| || ||||||||||||||| | | || ||||||||||| ||||||||||| |
|
|
| T |
7471594 |
tagcccaataccattgttcaaagaacattttcgaactgatggtgaagcagtacttaagtttccaccacctaaagtgat |
7471517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 6424643 - 6424573
Alignment:
| Q |
270 |
ttattttgagcagttaatcagtctgcatggatgactgatgaagaacttggaagagagatggttgctggagt |
340 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||||||||||||| ||| ||| ||| |||||| |||||||||| |
|
|
| T |
6424643 |
ttattttgagtagtcgatcattctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagt |
6424573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 6363750 - 6363685
Alignment:
| Q |
272 |
attttgagcagttaatcagtctgcatggatgactgatgaagaacttggaagagagatggttgctgg |
337 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||||||| ||| ||| ||| |||||| ||||||| |
|
|
| T |
6363750 |
attttgaacagtcgatcattctgcatggatgactgatgaggaatttgcaagggagatgattgctgg |
6363685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 610 - 881
Target Start/End: Original strand, 9604840 - 9605111
Alignment:
| Q |
610 |
atatttttaagccatattaaattannnnnnngacaggagttccctccgaaaagcacgttagatattgctgtctatggtgatcaaacaagtatattaaaaa |
709 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9604840 |
atatttttaagccatattaaattatttttttgacaggagttcccaccgaaaagcacgttagatattgctgtctatggtgatcaaacaagtatattaaaaa |
9604939 |
T |
|
| Q |
710 |
aggaacatttggagattaatctaggtgggctcacagtagaaaaggtataatgatataaatataaaacatgtttcacataaaagtcattattaattggctt |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9604940 |
aggaacatttggagattaatctaggtgggctcacagtagaaaaggtataatgatataaatataaaacatgtttcacataaaagtcattattaattggctt |
9605039 |
T |
|
| Q |
810 |
ataaattatttaaacttatgaaaagtaagtgattgaaattaaacttgtgaaacaggcacttaatggtcaaag |
881 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9605040 |
ataaattatttaaatttatgaaaagtaagtgattgaaattaaacttgtgaaacaggcacttaatggtcaaag |
9605111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 9604084 - 9604200
Alignment:
| Q |
291 |
tctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaacccttgtgtgattcgccttctacaagtaagtttcaaatctattcttg |
390 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9604084 |
tctgcatggatgactgatgaagaatttggaagagagatggttgctggagtaaacccttgtgtgattcgccttctacaagtaagtttcaaatctattcttg |
9604183 |
T |
|
| Q |
391 |
atcatcaaaagtcataa |
407 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9604184 |
atcatcaaaagtcataa |
9604200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 455 - 577
Target Start/End: Original strand, 9604249 - 9604371
Alignment:
| Q |
455 |
ctactgtatcaatatcaatgagggggtctgttcaatgataagagnnnnnnnnnnngttacaatttaatgataagagtttgatattgtagtttttgaaaga |
554 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9604249 |
ctactgtatctatatcaatgagggggtctgtttaatgataagagtttttttcttggttacaatttaatgataagagtttgatattgtagtttttgaaaga |
9604348 |
T |
|
| Q |
555 |
aatcggttgtaaaatgatgaata |
577 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9604349 |
aatcggttgtaaaatgatgaata |
9604371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 9604391 - 9604430
Alignment:
| Q |
579 |
ataatgctttccacactcctcaatttaatatatattttta |
618 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9604391 |
ataatgctttccacattcctcagtttaatatatattttta |
9604430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 36744659 - 36744727
Alignment:
| Q |
289 |
agtctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaacccttgtgtgattc |
357 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||| ||||||| ||||| || |||||||||| |
|
|
| T |
36744659 |
agtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctggtgtaaatccatgtgtgattc |
36744727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 42688070 - 42688160
Alignment:
| Q |
268 |
tcttattttgagcagttaatcagtctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaacccttgtgtgattcg |
358 |
Q |
| |
|
|||| ||||||||||| | | |||||||||||||||| |||||||| ||| |||||| ||| ||||||| ||||| ||||| ||||||| |
|
|
| T |
42688070 |
tcttgttttgagcagtgagtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcg |
42688160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 42693708 - 42693655
Alignment:
| Q |
290 |
gtctgcatggatgactgatgaagaacttggaagagagatggttgctggagtaaa |
343 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||| | ||||||||||| |
|
|
| T |
42693708 |
gtctgcatggatgactgatgaagaatttgcaagagaaatgctagctggagtaaa |
42693655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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