View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3701_low_10 (Length: 430)

Name: NF3701_low_10
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3701_low_10
NF3701_low_10
[»] chr8 (3 HSPs)
chr8 (1-168)||(12778656-12778823)
chr8 (290-328)||(35753108-35753146)
chr8 (292-326)||(38580482-38580516)
[»] chr2 (2 HSPs)
chr2 (276-316)||(33859225-33859265)
chr2 (286-325)||(25726940-25726979)
[»] chr7 (3 HSPs)
chr7 (283-325)||(35451133-35451175)
chr7 (276-325)||(37829978-37830027)
chr7 (289-325)||(3294521-3294557)
[»] chr6 (4 HSPs)
chr6 (290-325)||(2477278-2477313)
chr6 (285-327)||(3004846-3004888)
chr6 (292-325)||(5556084-5556117)
chr6 (283-316)||(28022129-28022162)
[»] chr4 (2 HSPs)
chr4 (290-325)||(27112409-27112444)
chr4 (271-325)||(38020424-38020478)
[»] chr1 (2 HSPs)
chr1 (283-325)||(10280448-10280490)
chr1 (289-325)||(10799268-10799304)
[»] scaffold0071 (1 HSPs)
scaffold0071 (292-325)||(63447-63480)
[»] chr3 (2 HSPs)
chr3 (298-327)||(54718198-54718227)
chr3 (283-327)||(42529498-42529542)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 12778823 - 12778656
Alignment:
Q  1 ttggaaaggtcctcaactcttttgcatctttttatcattgctatgttaaaaatatatagtataggaactagtagtggattatttaataatgtgggacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12778823 ttggaaaggtcctcaactcttttgcatctttttatcattgctatgttaaaaatatatagtataggaactagtagtggattatttaataatgtgggacaag 12778724  T
Q  101 aggagaggcattagtacttaacttatcatttcatctcaaaggtgtgaatacaattgcatatgcttcta 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12778723 aggagaggcattagtacttaacttatcatttcatctcaaaggtgtgaatacaattgcatatgcttcta 12778656  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 35753108 - 35753146
Alignment:
Q  290 agtaaatattaatctaacaattaattaataacatttatc 328  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35753108 agtaaatattaatctaacaaataattaataacatttatc 35753146  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 38580516 - 38580482
Alignment:
Q  292 taaatattaatctaacaattaattaataacattta 326  Q
    ||||||||||||||||||||||||| |||||||||    
T  38580516 taaatattaatctaacaattaattactaacattta 38580482  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 33859265 - 33859225
Alignment:
Q  276 aacccgcacgaatgagtaaatattaatctaacaattaatta 316  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  33859265 aacccggacgaatgagtaaatattaatctaacaattaatta 33859225  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 25726979 - 25726940
Alignment:
Q  286 aatgagtaaatattaatctaacaattaattaataacattt 325  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  25726979 aatgagtaaatattaatctaacaattaactactaacattt 25726940  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 35451175 - 35451133
Alignment:
Q  283 acgaatgagtaaatattaatctaacaattaattaataacattt 325  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  35451175 acgaatgagtaaatattaatctaacaactaattattaacattt 35451133  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 37829978 - 37830027
Alignment:
Q  276 aacccgcacgaatgagtaaatattaatctaacaattaattaataacattt 325  Q
    |||||| ||||| ||||| ||||||||||||||| |||||| ||||||||    
T  37829978 aacccggacgaaggagtagatattaatctaacaactaattactaacattt 37830027  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 3294557 - 3294521
Alignment:
Q  289 gagtaaatattaatctaacaattaattaataacattt 325  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  3294557 gagtaaatattaatctaacaattaattactaatattt 3294521  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 2477278 - 2477313
Alignment:
Q  290 agtaaatattaatctaacaattaattaataacattt 325  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2477278 agtaaatattaatctaacaattaattactaacattt 2477313  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 3004888 - 3004846
Alignment:
Q  285 gaatgagtaaatattaatctaacaattaattaataacatttat 327  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||    
T  3004888 gaatgagcaaatattaatctaacaactaattactaacatttat 3004846  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 5556084 - 5556117
Alignment:
Q  292 taaatattaatctaacaattaattaataacattt 325  Q
    ||||||||||||||||||||||||| ||||||||    
T  5556084 taaatattaatctaacaattaattactaacattt 5556117  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 28022129 - 28022162
Alignment:
Q  283 acgaatgagtaaatattaatctaacaattaatta 316  Q
    |||||||||||||||||||||||||||| |||||    
T  28022129 acgaatgagtaaatattaatctaacaataaatta 28022162  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Complemental strand, 27112444 - 27112409
Alignment:
Q  290 agtaaatattaatctaacaattaattaataacattt 325  Q
    ||||||||||||||||||||||||||| ||||||||    
T  27112444 agtaaatattaatctaacaattaattactaacattt 27112409  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 38020424 - 38020478
Alignment:
Q  271 gttcgaacccgcacgaatgagtaaatattaatctaacaattaattaataacattt 325  Q
    |||| |||||| ||||| ||||||||||||||||||||| | |||| ||||||||    
T  38020424 gttcaaacccggacgaaggagtaaatattaatctaacaactgattactaacattt 38020478  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 10280448 - 10280490
Alignment:
Q  283 acgaatgagtaaatattaatctaacaattaattaataacattt 325  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  10280448 acgaaggagtaaatattaatctaacaactaattaagaacattt 10280490  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 10799268 - 10799304
Alignment:
Q  289 gagtaaatattaatctaacaattaattaataacattt 325  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  10799268 gagtaaatattaatctaacaactaattactaacattt 10799304  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 63447 - 63480
Alignment:
Q  292 taaatattaatctaacaattaattaataacattt 325  Q
    |||||||||||||||||| |||||||||||||||    
T  63447 taaatattaatctaacaactaattaataacattt 63480  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 327
Target Start/End: Complemental strand, 54718227 - 54718198
Alignment:
Q  298 ttaatctaacaattaattaataacatttat 327  Q
    ||||||||||||||||||||||||||||||    
T  54718227 ttaatctaacaattaattaataacatttat 54718198  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 42529498 - 42529542
Alignment:
Q  283 acgaatgagtaaatattaatctaacaattaattaataacatttat 327  Q
    ||||| ||||||||||||||||||||||| | || ||||||||||    
T  42529498 acgaaagagtaaatattaatctaacaattgactactaacatttat 42529542  T

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