View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_low_13 (Length: 366)
Name: NF3701_low_13
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 24167319 - 24167656
Alignment:
| Q |
10 |
acatcatcaagagcttcaaacaataacaaatacgatctagcagaacgtaaaaatttgtactgggattttcaactccttgctactaatgtttcagtagaca |
109 |
Q |
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| T |
24167319 |
acatcataaagagcttcaaactataacaaatacgatctagcagaacgtaaaaatttgtactgggattttcaaccccttgctactaatgtttcagtagaca |
24167418 |
T |
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| Q |
110 |
agtcatcaatgagatgggcatatatatagtaagatacatgtagaagatagcacatgttggccctttacagtataccttttgcaacaaggtattaaaaatt |
209 |
Q |
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| T |
24167419 |
agtcttcaatgagatgggcatatatatagtaagatacatgtagaagataag------tggccctttacagtataccttttgcaacaaggtattaaaaatt |
24167512 |
T |
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| Q |
210 |
agaataccttgtgttacacttgtaccaaacaccttattgaatgaaaatacccttcttgcatcttttccttgcttgattggatttacaatcatcatgtctc |
309 |
Q |
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| T |
24167513 |
agaataccttgtgttacacttgtaccaaacaccttattgaatgaaaatacccttcttgcatcttttccttgcttgattggatttacaatcatcatgtctc |
24167612 |
T |
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| Q |
310 |
cattttctccaatatagtcaactgtcgactgtccatttgattgt |
353 |
Q |
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| T |
24167613 |
cattttctccaatatagtcaactgtcgactgtccatttgattgt |
24167656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 42235573 - 42235689
Alignment:
| Q |
237 |
aacaccttattgaatgaaaatacccttcttgcatcttttccttgcttgattggatttacaatcatcatgtctccattttctccaatatagtcaactgtcg |
336 |
Q |
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| T |
42235573 |
aacaccttattgaatgaaaatacttttctagcatcttttccctgcttaaggggattcacaatcatgatgtttccattttctcctatataatcgactgtag |
42235672 |
T |
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| Q |
337 |
actgtccatttgattgt |
353 |
Q |
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| T |
42235673 |
attgtccatttgattgt |
42235689 |
T |
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