View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_low_17 (Length: 310)
Name: NF3701_low_17
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_17 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 43 - 292
Target Start/End: Complemental strand, 102773 - 102524
Alignment:
| Q |
43 |
gacaaaataaaataatgaaagtttaattagtagtagtatgttagtattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaact |
142 |
Q |
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| T |
102773 |
gacaaaataaaataatgaaagtttaattagtagtagtatgttagtattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaact |
102674 |
T |
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| Q |
143 |
tcttcaagtttgattcactaacagttactttgccagccttcctcagttgaactgctgattcacatgtctaaaacaatttaagagacacaaatagcttaga |
242 |
Q |
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| T |
102673 |
tcttcaagtttgattcactaacagttactttgccagccttcctcagttgaactgctgattcacatgtctataacaatttaagagacacaaatagcttaga |
102574 |
T |
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| Q |
243 |
gcctaattaattgtaattaatcaataaattaatggatgctaagtgttaag |
292 |
Q |
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| T |
102573 |
gcctaattaattgtaattaatcaataaattaatggatgctaagtgttaag |
102524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 100758 - 100631
Alignment:
| Q |
87 |
tattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactttgccagccttcctc |
186 |
Q |
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| T |
100758 |
tattacctcaaaatgttcatcttgtacaccagttttgaaatgagtggcacctaatttcttcaaatttgattctctgactgtgacttttccagccttgcgc |
100659 |
T |
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| Q |
187 |
agttgaactgctgattcacatgtctaaa |
214 |
Q |
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| T |
100658 |
agttgaactgctgactcacatgtctaaa |
100631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 25847515 - 25847654
Alignment:
| Q |
73 |
tagtagtatgttagtattacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactt |
172 |
Q |
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| T |
25847515 |
tagtagtatgttagtattacctcaaaatgctcatcttttacaccagttttgaaatgagtggcacctaactttttcaagtttgattctctaacagtgactt |
25847614 |
T |
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| Q |
173 |
tgccagccttcctcagttgaactgctgattcacatgtcta |
212 |
Q |
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| T |
25847615 |
taccagccttacgtagttgaactgctgattcacatgtcta |
25847654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 25849471 - 25849594
Alignment:
| Q |
89 |
ttacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactttgccagccttcctcag |
188 |
Q |
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||||||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||| || || | ||||| |||||||| | ||| |
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| T |
25849471 |
ttacctcaaaatgttcatcttgcacaccagttttgaaatgagtggcacctaacttcttcaaatttgattctctcactctgactttaccagccttacgcag |
25849570 |
T |
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| Q |
189 |
ttgaactgctgattcacatgtcta |
212 |
Q |
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| T |
25849571 |
ctgaactgctgattcacatgtcta |
25849594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 25845181 - 25845303
Alignment:
| Q |
90 |
tacctcaaaatgctcatcttttacaccagatttaaaatgagtggcacctaacttcttcaagtttgattcactaacagttactttgccagccttcctcagt |
189 |
Q |
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||||||||||||||| ||| ||||||| |||||||||| | |||||||| || |||||| ||||||| || || || ||||| || | || | || | |
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| T |
25845181 |
tacctcaaaatgctcgtctactacaccatatttaaaatggttagcacctaattttttcaagcttgattctctgaccgtaactttaccggattttcgcaat |
25845280 |
T |
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| Q |
190 |
tgaactgctgattcacatgtcta |
212 |
Q |
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| T |
25845281 |
tgaactgctgattcacatgtcta |
25845303 |
T |
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