View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3701_low_19 (Length: 270)

Name: NF3701_low_19
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3701_low_19
NF3701_low_19
[»] chr2 (22 HSPs)
chr2 (1-253)||(40948750-40949003)
chr2 (152-253)||(40945914-40946015)
chr2 (1-135)||(20140822-20140956)
chr2 (11-133)||(1943885-1944007)
chr2 (20-135)||(28191707-28191821)
chr2 (70-135)||(24895756-24895821)
chr2 (83-134)||(17642434-17642485)
chr2 (25-132)||(28191442-28191549)
chr2 (85-135)||(35652126-35652176)
chr2 (20-135)||(578206-578325)
chr2 (83-135)||(10439836-10439888)
chr2 (20-135)||(12926506-12926622)
chr2 (85-132)||(12496892-12496939)
chr2 (83-134)||(27987365-27987416)
chr2 (83-134)||(28073897-28073948)
chr2 (29-135)||(35665326-35665432)
chr2 (85-135)||(43281892-43281941)
chr2 (83-132)||(8095019-8095068)
chr2 (69-134)||(17642622-17642687)
chr2 (70-135)||(27002997-27003062)
chr2 (74-135)||(41245622-41245683)
chr2 (75-123)||(38825334-38825382)
[»] chr3 (17 HSPs)
chr3 (5-135)||(25693296-25693426)
chr3 (5-132)||(52275101-52275225)
chr3 (5-135)||(16024763-16024893)
chr3 (5-135)||(28259708-28259836)
chr3 (5-113)||(51107926-51108033)
chr3 (67-135)||(17321894-17321963)
chr3 (20-135)||(54141605-54141719)
chr3 (49-132)||(1741971-1742054)
chr3 (70-136)||(49278663-49278729)
chr3 (83-134)||(44664531-44664582)
chr3 (84-134)||(28260028-28260078)
chr3 (49-135)||(33309948-33310034)
chr3 (70-136)||(40374639-40374705)
chr3 (74-135)||(31989803-31989864)
chr3 (84-133)||(51107679-51107728)
chr3 (84-133)||(53804596-53804645)
chr3 (75-123)||(38507168-38507216)
[»] chr4 (13 HSPs)
chr4 (49-135)||(17947289-17947375)
chr4 (35-135)||(41823538-41823638)
chr4 (70-133)||(5521527-5521590)
chr4 (84-132)||(11692153-11692201)
chr4 (70-134)||(38851974-38852038)
chr4 (70-134)||(51203221-51203285)
chr4 (83-133)||(11692574-11692623)
chr4 (85-135)||(31792623-31792673)
chr4 (74-135)||(5497092-5497153)
chr4 (74-135)||(52131907-52131968)
chr4 (70-134)||(2478935-2478999)
chr4 (83-131)||(36955682-36955730)
chr4 (84-132)||(40154675-40154723)
[»] chr5 (18 HSPs)
chr5 (70-135)||(40972143-40972208)
chr5 (70-132)||(7630641-7630703)
chr5 (69-137)||(38445989-38446057)
chr5 (29-132)||(38445670-38445773)
chr5 (85-135)||(9125377-9125427)
chr5 (20-98)||(15304601-15304679)
chr5 (70-135)||(21034622-21034687)
chr5 (74-131)||(32892124-32892181)
chr5 (73-133)||(12542110-12542170)
chr5 (25-133)||(26032249-26032357)
chr5 (70-126)||(40971848-40971904)
chr5 (5-112)||(42267586-42267696)
chr5 (49-135)||(41863733-41863819)
chr5 (70-135)||(3850207-3850272)
chr5 (70-135)||(32892446-32892511)
chr5 (25-101)||(756898-756974)
chr5 (95-135)||(37782325-37782365)
chr5 (69-109)||(38142397-38142437)
[»] chr1 (15 HSPs)
chr1 (60-133)||(9117485-9117558)
chr1 (69-135)||(27086271-27086337)
chr1 (83-135)||(91742-91794)
chr1 (85-135)||(14397989-14398039)
chr1 (5-135)||(27085953-27086085)
chr1 (83-135)||(30567957-30568009)
chr1 (59-133)||(14520840-14520913)
chr1 (74-135)||(538921-538981)
chr1 (85-133)||(3910180-3910229)
chr1 (68-109)||(10840505-10840545)
chr1 (74-135)||(19238170-19238231)
chr1 (70-135)||(33261690-33261754)
chr1 (70-135)||(33281849-33281913)
chr1 (103-135)||(35766595-35766627)
chr1 (83-135)||(46947421-46947473)
[»] scaffold0939 (1 HSPs)
scaffold0939 (25-135)||(685-795)
[»] chr6 (5 HSPs)
chr6 (25-99)||(1427282-1427355)
chr6 (28-132)||(4096749-4096853)
chr6 (20-133)||(3014516-3014630)
chr6 (85-134)||(4096483-4096532)
chr6 (75-135)||(20510280-20510340)
[»] chr8 (8 HSPs)
chr8 (25-134)||(15249561-15249670)
chr8 (84-135)||(33757872-33757923)
chr8 (70-134)||(22210257-22210321)
chr8 (84-135)||(33758154-33758205)
chr8 (87-128)||(194621-194661)
chr8 (87-128)||(309458-309498)
chr8 (83-132)||(12871117-12871165)
chr8 (74-135)||(36102133-36102194)
[»] chr7 (13 HSPs)
chr7 (83-134)||(1619673-1619724)
chr7 (68-133)||(14584929-14584994)
chr7 (20-135)||(33005106-33005222)
chr7 (28-112)||(33998831-33998915)
chr7 (75-133)||(45318526-45318584)
chr7 (74-135)||(2962985-2963046)
chr7 (68-133)||(15998799-15998864)
chr7 (49-134)||(25245012-25245097)
chr7 (69-134)||(30218749-30218814)
chr7 (91-132)||(37389815-37389856)
chr7 (75-123)||(7475804-7475852)
chr7 (73-133)||(13009035-13009095)
chr7 (83-135)||(30219063-30219115)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 40949003 - 40948750
Alignment:
Q  1 cacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40949003 cacatcaaacttattttcgttagtgaccaaaaacaaaacaaaaatatctgtgaagataaaaacacatcgttttattttatatggactaaaataaaaattt 40948904  T
Q  101 gttatatttatagcgataaaaaacttatttaaccccagttaaaatattaaaacaaaatagtgtaatg-caacaattaatctaaaatcaaatttgaagacc 199  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40948903 gttatatttatagggataaaaaacttatttaaccccagttaaaatattaaaacaaaatagtgtaatgccaacaattaatctaaaatcaaatttgaagacc 40948804  T
Q  200 ataaccaaaataaacaaatgcaccatccttcccatcaacgtatgatccacacag 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40948803 ataaccaaaataaacaaatgcaccatccttcccatcaacgtatgatccacacag 40948750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 40946015 - 40945914
Alignment:
Q  152 acaaaatagtgtaatgcaacaattaatctaaaatcaaatttgaagaccataaccaaaataaacaaatgcaccatccttcccatcaacgtatgatccacac 251  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40946015 acaaaatagtgtaatgcaacaattaatctaaaatcaaatttaaagaccataaccaaaataaacaaatgcactatccttcccatcaacgtatgatccacac 40945916  T
Q  252 ag 253  Q
    ||    
T  40945915 ag 40945914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20140956 - 20140822
Alignment:
Q  1 cacatcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaattt 100  Q
    ||||||||| ||||||||||||| |||| |||||||||||||| ||| ||||| ||| |||| || ||||||||||||||| |||||||||| |||||||    
T  20140956 cacatcaaaattattttcgttagggacctaaaacaaaacaaaaaaatttgtgaggatgaaaatacctcgttttattttataaggactaaaattaaaattt 20140857  T
Q  101 gttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||| || ||||| ||||||||||||    
T  20140856 gttatatttatagagacaaaaatcttatttaaccc 20140822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 1944007 - 1943885
Alignment:
Q  11 ttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatattta 110  Q
    ||||||||||||  ||||||||||||||||||| ||| ||||| ||  ||||||| ||||| ||||||||| |||||||||| ||||| | |||||||||    
T  1944007 ttattttcgttaaagaccaaaaacaaaacaaaaaaatttgtgaggaagaaaacacctcgttctattttataaggactaaaattaaaatctattatattta 1943908  T
Q  111 tagcgataaaaaacttatttaac 133  Q
    ||  ||  |||||||||||||||    
T  1943907 taaggacgaaaaacttatttaac 1943885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 28191707 - 28191821
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataa 119  Q
    |||| ||||||||||||||||||| | | ||||| ||| ||||||  || ||||||||| ||  || ||||||||||||||| |||||||||||  | ||    
T  28191707 ttagagaccaaaaacaaaacaaaaaattttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttatag-aaaaa 28191805  T
Q  120 aaaacttatttaaccc 135  Q
    |||| |||||||||||    
T  28191806 aaaaattatttaaccc 28191821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 24895756 - 24895821
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| || ||||||||||||||||||||||||||| ||  ||  |||||||||||||||||    
T  24895756 ttttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccc 24895821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 17642485 - 17642434
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    |||||||||||||||| | |||||||||||| ||| ||||||||||||||||    
T  17642485 ggactaaaatcaaaatctattatatttatagggatgaaaaacttatttaacc 17642434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 28191549 - 28191442
Alignment:
Q  25 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 124  Q
    ||||||||| |||| |||| ||| ||||| ||| ||||||    |||| ||||| || ||||||||||||||||| | ||||||||||| || |||||||    
T  28191549 gaccaaaaataaaataaaaaaatttgtgaggatgaaaacattcagtttaattttgtacggactaaaatcaaaattcgctatatttatagggacaaaaaac 28191450  T
Q  125 ttatttaa 132  Q
    ||| ||||    
T  28191449 ttaattaa 28191442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 35652126 - 35652176
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||||| |||||||| ||||||||||| ||| |||||||||||||||||    
T  35652126 actaaaattaaaatttgatatatttatagggatgaaaaacttatttaaccc 35652176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 578325 - 578206
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta---tatttatagcga 116  Q
    |||| ||||||||  ||||||||| ||| |||   ||| ||||||  || ||||||||| || ||||||||||||||||||| ||   ||||||||| ||    
T  578325 ttagggaccaaaactaaaacaaaaaaatttgtcgggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatattatttataggga 578226  T
Q  117 t-aaaaaacttatttaaccc 135  Q
    | ||||||||||||||||||    
T  578225 taaaaaaacttatttaaccc 578206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 10439836 - 10439888
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||||| ||||||| || | | ||||||||||||||||||    
T  10439836 ggactaaaatcaaaatttgatatatttttaacaacaaaaaacttatttaaccc 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 12926622 - 12926506
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaa-agaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgata 118  Q
    |||| ||||||||| |||||||| | ||  ||||| ||| ||||||  || |||||||||  | |||| ||||||||||||   ||||||||||| |||     
T  12926622 ttagggaccaaaaataaaacaaacaaaaattgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatatttatagtgatg 12926523  T
Q  119 aaaaacttatttaaccc 135  Q
    |||||||||||||||||    
T  12926522 aaaaacttatttaaccc 12926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 12496892 - 12496939
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||||||||||||| ||||||||||||| ||| ||||| ||||||||    
T  12496892 actaaaatcaaaattcgttatatttatagggatgaaaaatttatttaa 12496939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 27987365 - 27987416
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  27987365 ggactaaaaacaaaatttgagatatttatagagagaaaaaacttatttaacc 27987416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 28073897 - 28073948
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| |||||||||  |||||||||| || |||||||||||||||||    
T  28073897 ggactaaaaacaaaatttgagatatttatagagagaaaaaacttatttaacc 28073948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 35665432 - 35665326
Alignment:
Q  29 aaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttat 128  Q
    |||||||||| |||| ||| ||||| ||| ||||||     ||| ||||| || ||||||||||||||||| | ||||||||||  ||  ||||||||||    
T  35665432 aaaaacaaaataaaaaaatttgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttat 35665333  T
Q  129 ttaaccc 135  Q
    |||||||    
T  35665332 ttaaccc 35665326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 43281892 - 43281941
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||||||||||  ||| ||| |||||||||||||||||    
T  43281892 actaaaatcaaaatttgttatattattag-gatgaaaaacttatttaaccc 43281941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 8095019 - 8095068
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||||||| ||||||||||||||||||||| ||  |||||| |||||||    
T  8095019 ggactaaaaacaaaatttgttatatttatagggactaaaaacatatttaa 8095068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 17642622 - 17642687
Alignment:
Q  69 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    |||| ||||| || ||||||||||||||||| | ||||||| ||| ||  ||||||||||||||||    
T  17642622 gtttaattttttaaggactaaaatcaaaattcgctatatttttagggacgaaaaacttatttaacc 17642687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 27002997 - 27003062
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| || ||||||||||| |||||||  |||||||||| ||  ||| |||||||||||||    
T  27002997 ttttattttttagggactaaaatccaaatttgacatatttatagggacgaaacacttatttaaccc 27003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 41245683 - 41245622
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||| | |||||||||| |||| ||| ||||||||||| || ||||||| ||||||||||    
T  41245683 attttaaagggactaaaatgaaaagttggtatatttatagggacaaaaaacatatttaaccc 41245622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 38825334 - 38825382
Alignment:
Q  75 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 123  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  38825334 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 38825382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 25693426 - 25693296
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 104  Q
    ||||| ||||||||||||| ||||||||||||||||| | ||| ||||| ||| ||||||| ||||||||||||||| |||| ||||||||||| |||||    
T  25693426 tcaaaattattttcgttagggaccaaaaacaaaacaacaaaatttgtgaggatgaaaacacctcgttttattttataaggaccaaaatcaaaatatgtta 25693327  T
Q  105 tatttatagcgataaaaaacttatttaaccc 135  Q
    || |||||| ||  |||||||||||||||||    
T  25693326 taattatagggacgaaaaacttatttaaccc 25693296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 52275101 - 52275225
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 104  Q
    ||||| ||||||||||||| |||||||||||||| ||||  || ||  | ||| ||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  52275101 tcaaaattattttcgttagggaccaaaaacaaaataaaa--atttgcaaggatgaaaacacctcgttttattttataaggactaaactcaaaatctgtta 52275198  T
Q  105 tatttatagcgataaaaaacttatttaa 132  Q
    ||||||||| ||  ||||||||||||||    
T  52275199 tatttatag-gacgaaaaacttatttaa 52275225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 16024763 - 16024893
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 104  Q
    ||||| |||| ||| |||| ||||||||| |||| |||| ||| ||||| ||| ||||||  || ||||||||| || ||||||||||||||||||| ||    
T  16024763 tcaaagttatattcattagagaccaaaaataaaataaaaaaatatgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgata 16024862  T
Q  105 tatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| ||  || ||||||||||||||    
T  16024863 tatttatagggacgaataacttatttaaccc 16024893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 28259836 - 28259708
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 104  Q
    ||||| ||||||||||||| ||||||||||||||||||| | | |||||  |||||| ||| | | |||||||||||||||||||||||| ||| |||||    
T  28259836 tcaaaattattttcgttagggaccaaaaacaaaacaaaaaattttgtgagaataaaa-caccttgctttattttatatggactaaaatcataatatgtta 28259738  T
Q  105 tatttatagcgataaaaaacttatttaaccc 135  Q
    | ||||||| ||   ||||||||||||||||    
T  28259737 tttttataggga-cgaaaacttatttaaccc 28259708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 51107926 - 51108033
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgtta 104  Q
    ||||| |||| || ||||| || ||||||||||| |||| ||| ||||| ||| ||||||| | |||||||||| || |||||||||||||||| |||||    
T  51107926 tcaaaattatatttgttagggatcaaaaacaaaataaaaaaat-tgtgatgatgaaaacaccttgttttattttttaaggactaaaatcaaaatctgtta 51108024  T
Q  105 tatttatag 113  Q
    |||||||||    
T  51108025 tatttatag 51108033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 17321894 - 17321963
Alignment:
Q  67 tcgttttattttatatggactaaaatcaaaatttgttatatttatagcga-taaaaaacttatttaaccc 135  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||| ||  ||||||||||||||||||    
T  17321894 tcgttttattttataaggactgaaatcaaaatctgttatatttatagggacgaaaaaacttatttaaccc 17321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 54141605 - 54141719
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataa 119  Q
    |||| ||||||||||||||||||| | | ||||| ||| ||||||  || ||||||||| ||  ||||||||| ||||||||||||||| || | || ||    
T  54141605 ttagggaccaaaaacaaaacaaaaaattttgtgaggatgaaaacatctcattttatttt-taaagactaaaatgaaaatttgttatattcatggggacaa 54141703  T
Q  120 aaaacttatttaaccc 135  Q
    ||||||| ||||||||    
T  54141704 aaaacttttttaaccc 54141719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 1742054 - 1741971
Alignment:
Q  49 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||| ||| ||||||  || ||||||||| || ||| ||||||||||||||| ||||||||||| ||| |||| |||||||||    
T  1742054 tgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 49278663 - 49278729
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccc 136  Q
    |||||||||| | ||||||||||||||||  ||||||| ||||| ||  ||||||||||||||||||    
T  49278663 ttttattttacaaggactaaaatcaaaatcagttatatatatagggacgaaaaacttatttaacccc 49278729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 44664582 - 44664531
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| ||||| ||||||||||||||  ||| ||||||||||||||||    
T  44664582 ggactaaaaacaaaaattgttatatttataaggattaaaaacttatttaacc 44664531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 28260028 - 28260078
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    |||||||||||||||||| ||||||| ||| ||  ||||||||||||||||    
T  28260028 gactaaaatcaaaatttgctatatttttagggacgaaaaacttatttaacc 28260078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 33309948 - 33310034
Alignment:
Q  49 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||| ||| |||||||  ||||||||||| || |||||||||| |||||| | ||||| | ||| ||  |||||||||||||||||    
T  33309948 tgtgaggatgaaaacaccccgttttattttttagggactaaaataaaaattcgctatatatttagggaagaaaaacttatttaaccc 33310034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 40374705 - 40374639
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccc 136  Q
    |||| ||||||  ||||||||| | |||||  |||||||||||| || |||||||||||||||||||    
T  40374705 tttttttttatgaggactaaaaacgaaattgattatatttatagggacaaaaaacttatttaacccc 40374639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 31989864 - 31989803
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||| || |||||||||| |||||||| ||||||||||  ||  |||||||||||||||||    
T  31989864 attttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccc 31989803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 51107728 - 51107679
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    |||||||||||||||||||||||||| ||  || ||| ||||||||||||    
T  51107728 gactaaaatcaaaatttgttatatttttaaggacaaagaacttatttaac 51107679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 53804645 - 53804596
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    |||||||||||||||||| |||||||| || ||  |||||||||||||||    
T  53804645 gactaaaatcaaaatttgatatatttaaagggacgaaaaacttatttaac 53804596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 38507168 - 38507216
Alignment:
Q  75 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 123  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  38507168 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 38507216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 17947289 - 17947375
Alignment:
Q  49 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||| ||| ||||||  || ||||||||| || ||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||    
T  17947289 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 41823638 - 41823538
Alignment:
Q  35 aaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| ||| | ||| ||||||||||  || |||||| || || ||| ||||||||||||||| |||||||||   ||| ||||||||||||||||    
T  41823638 aaaacaaaaaaatttatgaggataaaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaacc 41823539  T
Q  135 c 135  Q
    |    
T  41823538 c 41823538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 5521527 - 5521590
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    ||||||||| || ||||||||||||||||| | ||||||||||| ||  |||||||||||||||    
T  5521527 ttttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 11692201 - 11692153
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||||||||    
T  11692201 gactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 38852038 - 38851974
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| || ||| |||||||||||||| |||||||| ||| ||  ||||||||||||||||    
T  38852038 ttttattttttaaggattaaaatcaaaatttattatatttttagagacgaaaaacttatttaacc 38851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 51203285 - 51203221
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| || ||||||||||||||||| |  |||||||||| ||  ||||||||||||||||    
T  51203285 ttttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 11692574 - 11692623
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    ||||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  11692574 ggactaaaaacaaaatttgttata-ttatagagatcaaaaacttatttaac 11692623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 31792673 - 31792623
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||| ||||||||||| ||  ||||| |||||||||||    
T  31792673 actaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 5497092 - 5497153
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||| | |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  5497092 attttaaagggactaaaatgaaaagttgatatatttatagggatcaaaaacatatttaaccc 5497153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 52131968 - 52131907
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||| |||||||||||||||||||| ||||||||| ||| ||   | ||||||||||||||    
T  52131968 attttttatggactaaaatcaaaattcgttatatttgtagggacggataacttatttaaccc 52131907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 2478999 - 2478935
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||| ||| || |||||||||||||||||   ||||||||||| ||  ||||||||||||||||    
T  2478999 ttttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 36955682 - 36955730
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttattta 131  Q
    ||||||||| |||||||  |||||||||||||||  |||||||||||||    
T  36955682 ggactaaaaacaaaattcattatatttatagcgaacaaaaacttattta 36955730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 40154675 - 40154723
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||||||||||| |||| ||||||||||| ||  ||||||||||||||    
T  40154675 gactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 40972143 - 40972208
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| || ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||    
T  40972143 ttttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaaccc 40972208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 7630641 - 7630703
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||||||| || ||||||||||||||||||| ||||||||||| ||  ||||||||||||||    
T  7630641 ttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 38445989 - 38446057
Alignment:
Q  69 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacccca 137  Q
    |||| ||||| || ||||||||||||||||| | | ||||||||| ||| |||||||||||||||||||    
T  38445989 gtttaattttttagggactaaaatcaaaattcgctgtatttatagggatgaaaaacttatttaacccca 38446057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 38445773 - 38445670
Alignment:
Q  29 aaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttat 128  Q
    ||||||||||||||| | | ||||| ||| ||||||  || |||||| || ||  |||||||||||||||||| || |||||||| ||  ||||||||||    
T  38445773 aaaaacaaaacaaaaaattttgtgacgatgaaaacagctcattttatattttagagactaaaatcaaaatttgatacatttatagggacgaaaaacttat 38445674  T
Q  129 ttaa 132  Q
    ||||    
T  38445673 ttaa 38445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 9125427 - 9125377
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||| |||||||   |||||||||||||||||||||||||||||||||    
T  9125427 actaaaaacaaaattgactatatttatagcgataaaaaacttatttaaccc 9125377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 15304601 - 15304679
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaat 98  Q
    |||| ||||||||| ||||||||| | | ||||||||||||||||  || ||||||||| || ||||||||| ||||||    
T  15304601 ttagagaccaaaaagaaaacaaaaaattttgtgaagataaaaacatctcattttattttttaaggactaaaagcaaaat 15304679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 21034687 - 21034622
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| |  |||||| |||||||||||| ||||||||||| ||  |||||||||||||||||    
T  21034687 ttttattttttggggactataatcaaaatttgatatatttatagggaacaaaaacttatttaaccc 21034622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 32892181 - 32892124
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttattta 131  Q
    ||||| |||||||||||||||||||||   |||||||||| ||| |||||||||||||    
T  32892181 attttttatggactaaaatcaaaatttaccatatttatagggatgaaaaacttattta 32892124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 12542170 - 12542110
Alignment:
Q  73 tattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    |||||| || ||| |||||||||||||  |||||||||||| || ||||||||||||||||    
T  12542170 tattttttagggattaaaatcaaaattcattatatttatagagacaaaaaacttatttaac 12542110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 26032357 - 26032249
Alignment:
Q  25 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 124  Q
    |||||||||||||| |||| | | ||||| ||| ||||||    |||| ||||| || ||| ||||||||||||| | ||||||||||| ||  ||||||    
T  26032357 gaccaaaaacaaaataaaaaattttgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaac 26032258  T
Q  125 ttatttaac 133  Q
    |||||||||    
T  26032257 ttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 40971904 - 40971848
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaactt 126  Q
    ||||||||| || |||||||||||||||||| |||||||||||  ||| ||||||||    
T  40971904 ttttattttttagggactaaaatcaaaatttattatatttataaggatgaaaaactt 40971848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 42267696 - 42267586
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttatttt---atatggactaaaatcaaaatttg 101  Q
    ||||| ||||||| ||||| ||| |||||||||||||||  || || || ||| ||||||| |  |||||||||   ||| |||||||||||||||| |     
T  42267696 tcaaaattatttttgttagggacaaaaaacaaaacaaaaatatttgggaggatgaaaacaccttattttattttataataaggactaaaatcaaaatata 42267597  T
Q  102 ttatatttata 112  Q
    |||||||||||    
T  42267596 ttatatttata 42267586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 41863733 - 41863819
Alignment:
Q  49 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||| ||| ||||||  || ||||||||||||  || |||||| ||| |||| |||||||| || ||| |||||||||||||||||    
T  41863733 tgtgaggatgaaaacatctcattttattttatagagattaaaataaaattttgatatatttacagggatgaaaaacttatttaaccc 41863819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 3850207 - 3850272
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||||||||| ||||||||| ||||||||   |||||||||| ||  ||||||||| |||||||    
T  3850207 ttttattttatagggactaaaaacaaaattttgaatatttatagggactaaaaacttaattaaccc 3850272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 32892446 - 32892511
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||  |||||||||||||||| | ||||| ||||  ||  |||||||||||||||||    
T  32892446 ttttattttatagagactaaaatcaaaattcgctatatctataaagaagaaaaacttatttaaccc 32892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 756898 - 756974
Alignment:
Q  25 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttg 101  Q
    |||| |||||||||||||| ||| | ||| ||| ||||||   ||||||||||| ||  ||||||||||||||||||    
T  756898 gaccgaaaacaaaacaaaaaaatttatgaggatgaaaacattgcgttttattttttagagactaaaatcaaaatttg 756974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 37782365 - 37782325
Alignment:
Q  95 aaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  37782365 aaatttgttatatttataggaattaaaaacttatttaaccc 37782325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 38142437 - 38142397
Alignment:
Q  69 gttttattttatatggactaaaatcaaaatttgttatattt 109  Q
    |||||||||| || ||||||||||||||||||| |||||||    
T  38142437 gttttattttttaaggactaaaatcaaaatttgctatattt 38142397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 9117485 - 9117558
Alignment:
Q  60 aaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    |||||| || ||| ||||| || | ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  9117485 aaacacctcatttaattttttaagaactaaaatcaaaatttgttatatttatagggacaaaaaacttatttaac 9117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 27086271 - 27086337
Alignment:
Q  69 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||| ||||| || |||||||||||| |||||||||||||||||  ||| |||||||||||||||||    
T  27086271 gtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaaccc 27086337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 91742 - 91794
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  91742 ggactaaaatcaaaatttggtatatttatagagatcaaaaacatatttaaccc 91794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 14398039 - 14397989
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||| ||||||||||||  ||| |||||||||||||||||    
T  14398039 actaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccc 14397989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 27086085 - 27085953
Alignment:
Q  5 tcaaacttattttcgttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgtttt-attttatatggactaaaatcaaaattt-gt 102  Q
    ||||| |||| ||| |||| ||||||||| ||||||||| ||| ||||| ||| ||||||  || |||| ||||| || |||||||||| ||| ||| |     
T  27086085 tcaaaattatattcattagggaccaaaaataaaacaaaaaaatttgtgaggatgaaaacatctcatttttattttttagggactaaaattaaatttttga 27085986  T
Q  103 tatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||  || ||||| ||||||||||||    
T  27085985 tatatttataaggacaaaaatcttatttaaccc 27085953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 30567957 - 30568009
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| ||||||| | ||||||| ||||||| |||||||||||||||||    
T  30567957 ggactaaaaacaaaattcgatatatttttagcgatcaaaaacttatttaaccc 30568009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 14520840 - 14520913
Alignment:
Q  59 aaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    |||||| ||||||||||||| |||||||||||||||||||| | |||| || |||  |  |||||||||||||||    
T  14520840 aaaacatatcgttttatttt-tatggactaaaatcaaaattcgctataattttagaaacgaaaaacttatttaac 14520913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 538921 - 538981
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||||  |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  538921 attttatatggactaaaacgaaaagttggtatatttatag-gatcaaaaacatatttaaccc 538981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 3910229 - 3910180
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcga-taaaaaacttatttaac 133  Q
    ||||||||||||||||| |||||||| || || |||||||||||||||||    
T  3910229 actaaaatcaaaatttgatatatttacagagactaaaaaacttatttaac 3910180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 10840505 - 10840545
Alignment:
Q  68 cgttttattttatatggactaaaatcaaaatttgttatattt 109  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  10840505 cgttttatttt-taaggactaaaatcaaaatttgttatattt 10840545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 19238170 - 19238231
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||| | |||||||||  |||||||||||||||||||| ||  |||||| ||||||||||    
T  19238170 attttagagggactaaaacgaaaatttgttatatttatagggaccaaaaacatatttaaccc 19238231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 33261754 - 33261690
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||  ||  |||||||||||||||||    
T  33261754 ttttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33261690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 33281913 - 33281849
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||| || ||||||||||||||||||| ||| ||||||  ||  |||||||||||||||||    
T  33281913 ttttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 35766595 - 35766627
Alignment:
Q  103 tatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||| |||||||||||||||||||||    
T  35766595 tatatttatagggataaaaaacttatttaaccc 35766627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 46947421 - 46947473
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  46947421 ggactaaaatgaaaaattggtatatttatagggatcaaaaacatatttaaccc 46947473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 685 - 795
Alignment:
Q  25 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 124  Q
    ||||||||  ||||||||| ||| ||||| ||| ||||||  || || |||||| || ||| |||||| |||||||||||||||||||| ||  |||||     
T  685 gaccaaaactaaaacaaaaaaatttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaat 784  T
Q  125 ttatttaaccc 135  Q
    |||||||||||    
T  785 ttatttaaccc 795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 1427355 - 1427282
Alignment:
Q  25 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatt 99  Q
    ||||||||||||||||||| ||| ||||| ||| |||| || ||||||||||||| | |||||||||||||||||    
T  1427355 gaccaaaaacaaaacaaaaaaat-tgtgaggatgaaaatacctcgttttattttacaaggactaaaatcaaaatt 1427282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 4096749 - 4096853
Alignment:
Q  28 caaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaactta 127  Q
    |||||||||||||||| ||| ||||| ||| ||||||  || ||| ||||| || ||| ||||||||||||||| | ||||||||| ||  ||||| |||    
T  4096749 caaaaacaaaacaaaaaaatttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaattta 4096848  T
Q  128 tttaa 132  Q
    |||||    
T  4096849 tttaa 4096853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 3014516 - 3014630
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgat-a 118  Q
    |||| ||||||||| ||| ||||| ||| ||||| ||||||||||   | ||||||||| || | | |||||| ||||||   ||||||||||| ||| |    
T  3014516 ttagggaccaaaaataaagcaaaaaaatttgtgaggataaaaacatcacattttattttttaggaattaaaataaaaattcactatatttatagggatga 3014615  T
Q  119 aaaaacttatttaac 133  Q
    |||||||||||||||    
T  3014616 aaaaacttatttaac 3014630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 4096532 - 4096483
Alignment:
Q  85 actaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    |||||||| |||||| |||||||||||||  | |||||||||||||||||    
T  4096532 actaaaattaaaattcgttatatttataggaacaaaaaacttatttaacc 4096483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 20510280 - 20510340
Alignment:
Q  75 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||| ||||||||| |||||||  |||||||||||| ||  ||||||||| |||||||    
T  20510280 ttttatacggactaaaaacaaaattcattatatttatagggactaaaaacttaattaaccc 20510340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 15249561 - 15249670
Alignment:
Q  25 gaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaac 124  Q
    |||||||||||||| |||| | | ||||| ||| ||||||  || ||||||||| ||  ||| |||||||||||||| ||| ||||||| ||| |||| |    
T  15249561 gaccaaaaacaaaataaaaaattttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagc 15249660  T
Q  125 ttatttaacc 134  Q
    ||||||||||    
T  15249661 ttatttaacc 15249670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 33757923 - 33757872
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  33757923 gactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaaccc 33757872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 22210257 - 22210321
Alignment:
Q  70 ttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||  || ||| ||||||||||||| ||||||||||||  ||| ||||||||||||||||    
T  22210257 ttttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacc 22210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 33758154 - 33758205
Alignment:
Q  84 gactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||  |||||||||||| ||| ||||| |||||||||||    
T  33758154 gactaaaatcaaaattcattatatttatagagatgaaaaatttatttaaccc 33758205  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 194621 - 194661
Alignment:
Q  87 taaaatcaaaatttgttatatttatagcgataaaaaacttat 128  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  194621 taaaatcaaaatttgttatatttataggga-aaaaaacttat 194661  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 309458 - 309498
Alignment:
Q  87 taaaatcaaaatttgttatatttatagcgataaaaaacttat 128  Q
    ||||||||||||||||||||||||||| || |||||||||||    
T  309458 taaaatcaaaatttgttatatttataggga-aaaaaacttat 309498  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 12871117 - 12871165
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  12871117 ggactaaaa-caaaatttgatatatttatagtgatcaaaaacttatttaa 12871165  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 36102194 - 36102133
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||| | |||||||||| |||| ||| ||||||||||| ||| |||||| ||||||||||    
T  36102194 attttagagggactaaaatgaaaagttggtatatttatagggatcaaaaacatatttaaccc 36102133  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 1619673 - 1619724
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||||||||||||||||||||||||| |||  || ||||||||||||    
T  1619673 ggactaaaatcaaaatttgttatatttatagggatctaatacttatttaacc 1619724  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 14584994 - 14584929
Alignment:
Q  68 cgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    ||||||||||| || |||||||||||||||||| |||||||| ||| ||  ||||| |||||||||    
T  14584994 cgttttattttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 33005106 - 33005222
Alignment:
Q  20 ttagtgaccaaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttat-atggactaaaatcaaaatttgttatatttatagcgata 118  Q
    |||||||| ||||| ||||||||| ||| ||||| ||| |||||   || ||||||||| | | |||| |||| ||||||||  ||||||||||| ||      
T  33005106 ttagtgactaaaaataaaacaaaaaaatttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacg 33005205  T
Q  119 aaaaacttatttaaccc 135  Q
    |||||||||||||||||    
T  33005206 aaaaacttatttaaccc 33005222  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 33998831 - 33998915
Alignment:
Q  28 caaaaacaaaacaaaagaatctgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttata 112  Q
    ||||| |||||||||| ||| | ||| |||||||| |  || ||||||||| || ||||||||||||||||||  ||||||||||    
T  33998831 caaaatcaaaacaaaaaaatgtatgaggataaaaatatctcattttattttttagggactaaaatcaaaatttaatatatttata 33998915  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 45318584 - 45318526
Alignment:
Q  75 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    ||||||| |||  |||| ||||||||| ||||||||||| ||| |||||||||||||||    
T  45318584 ttttataaggataaaaaacaaaatttgatatatttatagagattaaaaacttatttaac 45318526  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 2963046 - 2962985
Alignment:
Q  74 attttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    |||||| | |||||||||  |||| ||| ||||||||||| |||||||||| ||||||||||    
T  2963046 attttagagggactaaaagaaaaagttggtatatttatagggataaaaaacatatttaaccc 2962985  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 15998864 - 15998799
Alignment:
Q  68 cgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    ||||||||||| || ||||||||||||||||||  ||||||| ||| ||  ||||| |||||||||    
T  15998864 cgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 25245097 - 25245012
Alignment:
Q  49 tgtgaagataaaaacacatcgttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    ||||||||| ||||||  || |||||| || || |||  |||||||||||| | ||| ||||||| ||| ||||||||||||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaacc 25245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 30218814 - 30218749
Alignment:
Q  69 gttttattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaacc 134  Q
    |||| |||||||| | | ||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  30218814 gtttaattttataggaattaaaatcaaaattcgttatatttatatggacgaaaaacttatttaacc 30218749  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 37389815 - 37389856
Alignment:
Q  91 atcaaaatttgttatatttatagcgataaaaaacttatttaa 132  Q
    ||||||||| ||||||||||||  ||||||||||||||||||    
T  37389815 atcaaaattcgttatatttataaggataaaaaacttatttaa 37389856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 7475852 - 7475804
Alignment:
Q  75 ttttatatggactaaaatcaaaatttgttatatttatagcgataaaaaa 123  Q
    ||||||| | ||||||| ||||||||||||||||||||| || ||||||    
T  7475852 ttttataagaactaaaaacaaaatttgttatatttatagggacaaaaaa 7475804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 13009095 - 13009035
Alignment:
Q  73 tattttatatggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaac 133  Q
    ||||||||  ||||||||| ||||||||| ||||||||||| ||  |||| ||||||||||    
T  13009095 tattttatgaggactaaaaacaaaatttgctatatttatagggactaaaagcttatttaac 13009035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 30219063 - 30219115
Alignment:
Q  83 ggactaaaatcaaaatttgttatatttatagcgataaaaaacttatttaaccc 135  Q
    ||||||||||||||||| | ||||||||||  ||  |||||||||||||||||    
T  30219063 ggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccc 30219115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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