View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_low_2 (Length: 677)
Name: NF3701_low_2
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Original strand, 31775471 - 31776117
Alignment:
| Q |
19 |
atttaacatgtgttcttatgacacatgttagcatttattttatttttatggcttgaagatcatcttatttaacccaaatacttgcttagggtgtgcttgg |
118 |
Q |
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| T |
31775471 |
atttaacatgtgttcttatgacacatgttagcatttatcttatttttatggcttgaagatcatcttatttaacccaaatacttgcttagtgtgtgcttgg |
31775570 |
T |
|
| Q |
119 |
accaacatatcagaattgtttatcatttggacaattgctctttaaacatctcaaaattgctcactttattaaaaatacattgtcgaaagttacaaccaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
31775571 |
accaacatatcagaattgtttatcatttggacaattgctttttagacatctcaaaattgctcactttactaaaaatatattgtcgaaagttacaaccaaa |
31775670 |
T |
|
| Q |
219 |
tcgatttttaacacataaaaagaaccgatcaagagttacaatccgatcatgaatgaaattcagatgtctaaagagcaattgtctatcttttgcttataca |
318 |
Q |
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| T |
31775671 |
tcgatttttaacacataaaaagagccgatcaagagttacaatccgatcatgaacgaaattcagatgtctaaagagcaattgtctatcttttgcgtataca |
31775770 |
T |
|
| Q |
319 |
ctaaccctattcatataacctgcaagtttaagcgacccgattaaaagagattgactagcacagataccctcgtacgtagcttaggttttattctcacaa- |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
31775771 |
ctaaccctattcatataacctgcaagtttaagcgacccgattaaaagagattgactagcacggatatcctcgtacgtagcttaggttttattctcacaat |
31775870 |
T |
|
| Q |
418 |
--tattataacacacacgggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtgaaaaatcttatttttccc |
515 |
Q |
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| T |
31775871 |
attattataacacacacgggtaagtctgtgttcaaggttctattattggttagcacattaaattaaaataaagtaacaagtgaaaaatctta-ttttccc |
31775969 |
T |
|
| Q |
516 |
agaacatacatacattgatgcatttgtgccccccacaacttctcattttgtagcatgacacttggattttttggtttgtcttcatatgttgtctttctga |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31775970 |
agaacatacatacattgatgcatttgtgccccccacaacttctcattttgtagcatgacacttggattttttggtttgtcttcatatgttgtctttctga |
31776069 |
T |
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| Q |
616 |
aagcaatcttcctctcattatcaaactttgtcctacgaatcctatgct |
663 |
Q |
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| T |
31776070 |
aagcaatcttcctctcattatcaaactctgtcctacgaatcctatgct |
31776117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 19986991 - 19986940
Alignment:
| Q |
144 |
tttggacaattgctctttaaacatctcaaaattgctcactttattaaaaata |
195 |
Q |
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| T |
19986991 |
tttggacaattgctatttaggcatctcaaaattgctcactttattgaaaata |
19986940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 36972618 - 36972586
Alignment:
| Q |
20 |
tttaacatgtgttcttatgacacatgttagcat |
52 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
36972618 |
tttaacatgtgttcttatgacacaagttagcat |
36972586 |
T |
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