View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_low_20 (Length: 252)
Name: NF3701_low_20
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 43696588 - 43696364
Alignment:
| Q |
10 |
attattcttaagcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatcaacag |
109 |
Q |
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| T |
43696588 |
attattattaagcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatcaacag |
43696489 |
T |
|
| Q |
110 |
gtgactaatcatactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaagt |
209 |
Q |
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| T |
43696488 |
gtgactaatcatactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaagt |
43696389 |
T |
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| Q |
210 |
taattttatatccataagtggaaag |
234 |
Q |
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| T |
43696388 |
taattttatatccataagtggaaag |
43696364 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 32214076 - 32214108
Alignment:
| Q |
175 |
ttgcatgcttaacattctaaattatgtcattaa |
207 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
32214076 |
ttgcatgcttaacattttaaattatgtcattaa |
32214108 |
T |
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