View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3701_low_25 (Length: 244)

Name: NF3701_low_25
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3701_low_25
NF3701_low_25
[»] chr8 (2 HSPs)
chr8 (123-229)||(15251232-15251338)
chr8 (89-121)||(43585368-43585400)
[»] chr1 (1 HSPs)
chr1 (89-126)||(35167785-35167822)
[»] chr3 (1 HSPs)
chr3 (89-124)||(13468366-13468402)
[»] chr2 (1 HSPs)
chr2 (89-126)||(31108605-31108644)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 15251232 - 15251338
Alignment:
Q  123 aactcagaatataattgcagtttcataagcttccatagttccttaactatcgaacaacccgaaaggcatgcaaatgactttcaatattattatgacatag 222  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15251232 aactgagaatataattgcagtttcataagcttccatagttccttaactatcgaacaacccgaaaggcatgcaaatgactttcaatattattatgacatag 15251331  T
Q  223 aggacac 229  Q
    |||||||    
T  15251332 aggacac 15251338  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 43585400 - 43585368
Alignment:
Q  89 tgacctatattacggggtaaaacaccattaacc 121  Q
    |||||||||||||||||||||||||||||||||    
T  43585400 tgacctatattacggggtaaaacaccattaacc 43585368  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 35167822 - 35167785
Alignment:
Q  89 tgacctatattacggggtaaaacaccattaacccaact 126  Q
    |||||||||||||||||||||||||||||| |||||||    
T  35167822 tgacctatattacggggtaaaacaccattaccccaact 35167785  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 13468366 - 13468402
Alignment:
Q  89 tgacctatattac-ggggtaaaacaccattaacccaa 124  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13468366 tgacctatattacaggggtaaaacaccattaacccaa 13468402  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 31108605 - 31108644
Alignment:
Q  89 tgacctatattac--ggggtaaaacaccattaacccaact 126  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  31108605 tgacctatattacagggggtaaaacaccattaacccaact 31108644  T

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