View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3701_low_28 (Length: 216)
Name: NF3701_low_28
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 411514 - 411709
Alignment:
| Q |
1 |
ctggtcagataagcattgatggaaaagtgaagtacggtacaccacaccttacatgtgtgggatcttttgctgtggatgtgagcttagaagggaatctgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
411514 |
ctggtcagataagcattgatggaaaagtgaagtacggtacaccacaccttacatgtgtgggatcttttgctgtggatgtgagcttagaagggaatctgat |
411613 |
T |
|
| Q |
101 |
tttgtgcagacagattgatcaacctgggatgattggtactgtcggaaacatattaggcgagaaaaatgtgaatgtgagctttatgagcgttggaag |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
411614 |
tttgtgcagacagattgatcaacctgggatgattggtactgtcggaaacatattaggcgagaaaaatgtgaatgtgagctttatgagtgttggaag |
411709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University