View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3701_low_4 (Length: 654)

Name: NF3701_low_4
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3701_low_4
NF3701_low_4
[»] chr8 (11 HSPs)
chr8 (6-639)||(25895754-25896369)
chr8 (148-630)||(30078253-30078741)
chr8 (354-577)||(24525327-24525550)
chr8 (356-630)||(26034345-26034619)
chr8 (349-590)||(24489427-24489667)
chr8 (280-572)||(20506922-20507222)
chr8 (402-523)||(25031127-25031248)
chr8 (353-605)||(25923728-25923981)
chr8 (437-614)||(24942490-24942663)
chr8 (381-607)||(26038254-26038478)
chr8 (267-318)||(24525230-24525281)
[»] chr4 (2 HSPs)
chr4 (403-562)||(17772773-17772932)
chr4 (146-237)||(17772516-17772607)
[»] chr2 (2 HSPs)
chr2 (381-577)||(36162400-36162596)
chr2 (178-238)||(36162171-36162231)
[»] chr3 (4 HSPs)
chr3 (425-542)||(45793561-45793678)
chr3 (425-542)||(45794829-45794946)
chr3 (441-558)||(45794482-45794599)
chr3 (145-193)||(45793300-45793348)


Alignment Details
Target: chr8 (Bit Score: 532; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 6 - 639
Target Start/End: Complemental strand, 25896369 - 25895754
Alignment:
Q  6 gatggttacttttgctgtgaccctccagactatgtcaccaaacttctcattccaccttcgtccagatccaagagatcgaaatccaccactgacaatttca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25896369 gatggttacttttgctgtgaccctccagactatgtcaccaaacttctcattccaccttcctccagatccaagagatcgaaatccaccactgacaatttca 25896270  T
Q  106 cctggagctggagttaccttaatgtacgtggaaataccgaattgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttcccc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25896269 cctggagctggagttaccttaatgtacgtggaaataccgaattgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttcccc 25896170  T
Q  206 agttgaaagcgaatttgtcgatcctattctcaaacacctccgagatcacaaagagcatatgaatctactttcatgtcattcaacatctaaggtgaag-tt 304  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  25896169 agttgaaagcgaatttgtcgaccctattctcaaacacctccgagatcacaaagagtatatgaatctactttcatgtcattcaacatctaaggtgaagttt 25896070  T
Q  305 ttatttttatggtttgtatttgtatatatagtattgcactaattttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgtt 404  Q
    |||||| ||||||||               |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25896069 ttatttgtatggttt---------------gtattgtactaattttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgtt 25895985  T
Q  405 ctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25895984 ctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgc 25895885  T
Q  505 ttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttggcctgttcatgtatgtatgcatgtatgtatcta 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    |||||||||||||||||||||    
T  25895884 ttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttggtatgttc----atgtatgcatgtatgtatcta 25895789  T
Q  605 tctatacacaaaaatatatttttgagggatgttgt 639  Q
    |||||||||||||||||||||||||||||||||||    
T  25895788 tctatacacaaaaatatatttttgagggatgttgt 25895754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 148 - 630
Target Start/End: Original strand, 30078253 - 30078741
Alignment:
Q  148 tgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctcaaacacctc-- 245  Q
    |||||||| ||||| | || || |||||| ||||||||||||| || ||||||||| ||  |||||| ||||||||||| |||||||||||   ||||      
T  30078253 tgggcatcgttggcaactttcatagtatggtggaagcatttctcgatgtcttttcctcacgtgaaagtgaatttgtcgaccctattctcaacagcctctt 30078352  T
Q  246 -cgagatcacaaagagcat---atgaatctactttcatgtcattcaacatctaaggtgaagttttatttttatggtttgtatttgtatatata-gtatt- 339  Q
     | |||| ||||| |   |   || ||| |||||||  ||||||  ||||| ||||||||||||| ||||||| |||||||| | | |||||| ||| |     
T  30078353 ccaagataacaaaaacagtgaaataaatatactttcgcgtcatttgacatcaaaggtgaagttttgtttttatcgtttgtatgtttttatatatgtagtt 30078452  T
Q  340 -gcactaattttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatc 438  Q
     | ||||||  ||| ||||||||||||   |||  |||||  |||| ||||||||||||| |||||||||| |||||||| |||||||||||| ||||||    
T  30078453 ggtactaatactgcgccatcacttgtt---atcgtgtacatgcagttgccacttcatgcccctgttctaaattatccagaatttcgcaatttatttcatc 30078549  T
Q  439 taaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttg 538  Q
    ||||||||||||||||||| |||||||||||| |  ||||| |||  ||||| ||||||||  |||||| ||||||||||||| | ||||  |||||| |    
T  30078550 taaagttcattcttccctgcttcaactcgaatcttctggtcgacgctcttgaaaaatgccacgtgcttcgagttctcataattaagagcagcaaggttcg 30078649  T
Q  539 ttgagttctcaagtttaattaaatcaatttttggcctgttcatgtatgtatgcatgtatgtatctatctatacacaaaaatatatttttgag 630  Q
    |||| ||||||||||||||| ||||||| |||||  |||  || |||  ||||||||||| |||||||| |||| |||||||||||||||||    
T  30078650 ttgacttctcaagtttaatttaatcaatctttggtatgtctatatatacatgcatgtatgaatctatctgtacataaaaatatatttttgag 30078741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 354 - 577
Target Start/End: Original strand, 24525327 - 24525550
Alignment:
Q  354 ccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttc 453  Q
    ||||||||||||||||||| ||||||||||| |||||||||| ||  ||||||||||||||||||||||||||| |||  || |||||||||||||||||    
T  24525327 ccatcacttgttgttatcatgtacaaccagtggccacttcattcccatgttctaaactatccagagtttcgcaaattagatcgtctaaagttcattcttc 24525426  T
Q  454 cctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtt 553  Q
    |||| || ||||| ||| |  || |||||||||||||||||||||| |||||| ||||||||||||| |||||||  |||||||||||| |||| |||||    
T  24525427 cctgctttaactcaaatcttctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataatccaaagcagcaaggtttgttgacttcttaagtt 24525526  T
Q  554 taattaaatcaatttttggcctgt 577  Q
    ||||| ||||||| ||||| ||||    
T  24525527 taatttaatcaatctttggtctgt 24525550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 356 - 630
Target Start/End: Original strand, 26034345 - 26034619
Alignment:
Q  356 atcacttgttgttatcacgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccc 455  Q
    ||||||||||||||||   ||||| ||||   || |||||||  |||||||||| ||||| || |||| | |||||| |||||| ||||||||||||||     
T  26034345 atcacttgttgttatcgtctacaagcagtgttcaattcatgctcctgttctaaattatcctgaatttcacgatttacatcatctgaagttcattcttcca 26034444  T
Q  456 tgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagttta 555  Q
    ||||||||||| ||| |  ||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||| ||||| |||| | |||| |||||||    
T  26034445 tgtttcaactcaaatcttctggtccacgtgcttgagaaatgccgcatgcttcaagttctcataattcagagcaacaaggtatgttaatttcttaagttta 26034544  T
Q  556 attaaatcaatttttggcctgttcatgtatgtatgcatgtatgtatctatctatacacaaaaatatatttttgag 630  Q
    ||| || |||| ||||||||||  || |||  |||||||||||||||||||| |||| |  ||||||||||||||    
T  26034545 attcaaacaatctttggcctgtctatatatacatgcatgtatgtatctatctgtacataccaatatatttttgag 26034619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 349 - 590
Target Start/End: Original strand, 24489427 - 24489667
Alignment:
Q  349 ttgctccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcat 448  Q
    |||| |||||||| |||||||||| |||||| |||| ||| ||||||||| ||||| ||||  || || | || |||||||||| |||||||||||||||    
T  24489427 ttgcaccatcact-gttgttatcatgtacaagcagtggccgcttcatgcccctgttataaataattcaaaattccgcaatttacatcatctaaagttcat 24489525  T
Q  449 tcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctc 548  Q
    ||| || |  |||||||| ||| |  || |||| |||||| ||||||||||  |||||||||||||||||||||| || |  ||||||||||||||||||    
T  24489526 tctccctttcttcaactcaaatcttctgctcaaagtgcttcagaaatgccatctgcttcaagttctcataattcagagtagcaaggtttgttgagttctc 24489625  T
Q  549 aagtttaattaaatcaatttttggcctgttcatgtatgtatg 590  Q
    ||||| |||||||||||||||||| || |  |||||||||||    
T  24489626 aagttcaattaaatcaatttttggtctatctatgtatgtatg 24489667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 280 - 572
Target Start/End: Original strand, 20506922 - 20507222
Alignment:
Q  280 gtcattcaacatctaaggtgaagttttatttttatggtttgta----tttgtatatata----gtattgcactaattttgctccatcacttgttgttatc 371  Q
    ||||||| ||||| |||||||||||||| | ||||||||| ||    ||| ||||||||    || ||| |||||| |||  ||||||||||||||||||    
T  20506922 gtcattcgacatcaaaggtgaagttttactattatggtttatacgaatttctatatatatgtagttttgtactaatattgggccatcacttgttgttatc 20507021  T
Q  372 acgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatg 471  Q
    | |||||| |||  ||| ||||    | |  ||||||| |||||||| ||| ||||||| |  ||||||||||||||| ||||||| |||||| |||||     
T  20507022 atgtacaagcagaagccgcttcgcagccccattctaaattatccagaattttgcaatttgcaccatctaaagttcattattccctgcttcaacacgaatc 20507121  T
Q  472 tcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttg 571  Q
    |  || |||||||||||||||||||||| |||||| |||||||||||||||| || |  ||||||||| ||||||||| ||| |||||||||||||||||    
T  20507122 ttctgctcaacgtgcttgagaaatgccatatgcttaaagttctcataattcagagtagcaaggtttgtagagttctcaggttaaattaaatcaatttttg 20507221  T
Q  572 g 572  Q
    |    
T  20507222 g 20507222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 402 - 523
Target Start/End: Complemental strand, 25031248 - 25031127
Alignment:
Q  402 gttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccaga 501  Q
    |||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||  || | |  || |||||||||||||||||||||| |    
T  25031248 gttctaaattatccagaattttgcaatttacatcatctaaagttcattcttccctgcttcaacatgagtcttctgctcaacgtgcttgagaaatgccata 25031149  T
Q  502 tgcttcaagttctcataattca 523  Q
    |||||||||||||| |||||||    
T  25031148 tgcttcaagttctcttaattca 25031127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 353 - 605
Target Start/End: Original strand, 25923728 - 25923981
Alignment:
Q  353 tccatcacttgttgttatcacgtacaaccagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattctt 452  Q
    ||||| ||||||| |||||| |||||| |||| | ||||||||||| |||||||| | |||||||| |||||| | |||  |||| |||||||||||||     
T  25923728 tccattacttgtttttatcatgtacaagcagtggacacttcatgcccctgttctagattatccagaatttcgccaattaaatcatataaagttcattctc 25923827  T
Q  453 ccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagt 552  Q
    || || |||||||||||| |  | ||||  |||||  | |||||  | |||||| || ||||||||||||| ||| | |||||||||||| || |||| |    
T  25923828 ccttgcttcaactcgaatcttcttgtcactgtgctccataaatgtgatatgcttaaatttctcataattcagagcgacaaggtttgttgacttttcaact 25923927  T
Q  553 ttaattaaatc-aatttttggcctgttcatgtatgtatgcatgtatgtatctat 605  Q
    |||||| |||| ||| |||||  |||  |||||||||||||||||| |||||||    
T  25923928 ttaattgaatcaaatatttggtttgtctatgtatgtatgcatgtatttatctat 25923981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 437 - 614
Target Start/End: Original strand, 24942490 - 24942663
Alignment:
Q  437 tctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtt 536  Q
    ||||||||| ||||| ||||| || ||||||||| | ||| | ||| |||||||||||||||| |||||||||||||| |||||||| ||||| ||||||    
T  24942490 tctaaagttgattctaccctgctttaactcgaatcttttgctaaacatgcttgagaaatgccatatgcttcaagttcttataattcagagcaataaggtt 24942589  T
Q  537 tgttgagttctcaagtttaattaaatcaatttttggcctgttcatgtatgtatgcatgtatgtatctatctatacaca 614  Q
    |||  |||| |  ||||||||| ||||||| ||||| |||      ||||||| ||||||| |||||||||| |||||    
T  24942590 tgtctagtttttgagtttaattgaatcaatctttggtctg----cctatgtatccatgtatttatctatctaaacaca 24942663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 381 - 607
Target Start/End: Original strand, 26038254 - 26038478
Alignment:
Q  381 cagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtca 480  Q
    |||| ||||||||| | | ||||| | || |||||||| ||||||  ||||   ||||||||||||| |||||||||||| ||||| | | |  ||||||    
T  26038254 cagtggccacttcaagtccctgttattaattatccagaatttcgctctttagaacatctaaagttcactcttccctgttttaactcaactattctggtca 26038353  T
Q  481 acgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgtt--gagttctcaagtttaattaaatcaatttttggcctgtt 578  Q
    |||||||||||||||| ||    |||  ||||||||||||||| ||| | ||||||||||   | |||||||||||| || ||||||| ||||| |||      
T  26038354 acgtgcttgagaaatgtcatgaccttatagttctcataattcatagcgacaaggtttgttcacacttctcaagtttacttgaatcaatctttggtctg-- 26038451  T
Q  579 catgtatgtatgcatgtatgtatctatct 607  Q
      | |||||||||||||||||||| ||||    
T  26038452 --tctatgtatgcatgtatgtatcaatct 26038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 24525230 - 24525281
Alignment:
Q  267 aatctactttcatgtcattcaacatctaaggtgaagttttatttttatggtt 318  Q
    ||||||||||   ||||||||||||| |||||||||||||||||||| ||||    
T  24525230 aatctacttttgcgtcattcaacatcaaaggtgaagttttatttttacggtt 24525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 403 - 562
Target Start/End: Original strand, 17772773 - 17772932
Alignment:
Q  403 ttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagat 502  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||| |  || |   |||||||||||||||||| ||    
T  17772773 ttctaaattatccagaatttcgcaatttaaatcatctaaagttcattcttccctgcttcaactcgaatcttctgctgggcgtgcttgagaaatgccacat 17772872  T
Q  503 gcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaat 562  Q
    ||||||||||||| ||||||| ||    |||||||||||||||||| |||| ||| ||||    
T  17772873 gcttcaagttctcctaattcagagttgcaaggtttgttgagttctcgagttcaatcaaat 17772932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 17772516 - 17772607
Alignment:
Q  146 attgggcatcattggccatttccacagtatgatggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctca 237  Q
    |||||||||||||||| | || || ||||||  |||||||| |||||| ||||||||||    |||||| ||||||||||| ||||| ||||    
T  17772516 attgggcatcattggcaacttgcagagtatggaggaagcatatcttgatgtcttttccctgcgtgaaagtgaatttgtcgaccctatgctca 17772607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 381 - 577
Target Start/End: Original strand, 36162400 - 36162596
Alignment:
Q  381 cagtcgccacttcatgccactgttctaaactatccagagtttcgcaatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtca 480  Q
    |||| |||| |||||||| |||||||| | ||||| || |||||| |||||| |||| | ||||| |||||||  ||||| ||||| ||| |  ||| |     
T  36162400 cagtggccaattcatgcccctgttctagattatcctgaatttcgccatttacatcatttgaagttaattcttctatgttttaactcaaatctgctgggcc 36162499  T
Q  481 acgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgttgagttctcaagtttaattaaatcaatttttggcctgt 577  Q
    | || |||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||| || |||| ||||| ||||    
T  36162500 atgttcttgagcaatgccacatgcttcaagttctcataattcagagcaacaaggtttgtttacttctcaagtttaattcaaacaatctttggtctgt 36162596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 36162171 - 36162231
Alignment:
Q  178 tggaagcatttcttgacgtcttttccccagttgaaagcgaatttgtcgatcctattctcaa 238  Q
    ||||||||||| |||| ||||||||||    |||||| ||||||||||| |||||||||||    
T  36162171 tggaagcattttttgatgtcttttccctgactgaaagtgaatttgtcgaccctattctcaa 36162231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 45793561 - 45793678
Alignment:
Q  425 caatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaa 524  Q
    |||||||| |||||||||||||||| |||| ||||| ||||| ||| | |||||| | ||| |||||||||| || ||| |||| ||||||||||||||     
T  45793561 caatttacatcatctaaagttcatttttccatgttttaactcaaatcttttggtccatgtgattgagaaatgacacatgattcaggttctcataattcag 45793660  T
Q  525 agcaagaaggtttgttga 542  Q
    ||||| ||| ||||||||    
T  45793661 agcaacaagttttgttga 45793678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 45794829 - 45794946
Alignment:
Q  425 caatttacttcatctaaagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaa 524  Q
    |||||||  |||||||||||||||| |||  ||||| ||||| ||| | |||||| | |||||||||||||| || ||| ||||| ||||||||||||||    
T  45794829 caatttatatcatctaaagttcatttttcaatgttttaactcaaatattttggtccatgtgcttgagaaatgacacatgattcaaattctcataattcaa 45794928  T
Q  525 agcaagaaggtttgttga 542  Q
    ||||| ||| ||||||||    
T  45794929 agcaacaagttttgttga 45794946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 558
Target Start/End: Complemental strand, 45794599 - 45794482
Alignment:
Q  441 aagttcattcttccctgtttcaactcgaatgtcttggtcaacgtgcttgagaaatgccagatgcttcaagttctcataattcaaagcaagaaggtttgtt 540  Q
    ||||||||||||   ||||||||||||||| |  | ||| | ||| |||||||||| || ||| ||||||||||||||||||  ||||| | ||||||||    
T  45794599 aagttcattcttttatgtttcaactcgaatcttctagtccatgtgtttgagaaatgtcatatgtttcaagttctcataattctgagcaatagggtttgtt 45794500  T
Q  541 gagttctcaagtttaatt 558  Q
     | || ||||||||||||    
T  45794499 aacttttcaagtttaatt 45794482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 45793300 - 45793348
Alignment:
Q  145 aattgggcatcattggccatttccacagtatgatggaagcatttcttga 193  Q
    |||||||||| ||| || | || ||||||||||||||||||||||||||    
T  45793300 aattgggcataattagcaactttcacagtatgatggaagcatttcttga 45793348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University