View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3701_low_6 (Length: 559)
Name: NF3701_low_6
Description: NF3701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3701_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Original strand, 6264984 - 6265511
Alignment:
| Q |
18 |
aatttatgtcttcaacttctgttgattcaaatttttgtatgttgtctttaaagttttgtaaaatggatatgaagccaaatatacgtatggatggttcagt |
117 |
Q |
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| T |
6264984 |
aatttatgtcttaaacttctgttgattcaaatttttgtatgttgtctttaaagttttgtaaaatggatatgaagccaaatatacgtatggatggttcagt |
6265083 |
T |
|
| Q |
118 |
cacttctgccggtgggtatagtactgtgtctcataatcaagtatttagagttaaattggtatcatatatcatgagaaatgttgcaccatagtaatttatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6265084 |
cacttctgccggtgggtatagtactgtgtctcataatcaagtatttagagttaaattggtatcatatatcatgagaaatgttgcaccatagtaatttttt |
6265183 |
T |
|
| Q |
218 |
tttaaagannnnnnnnnnnnnacattaaacgattccaccaattctccttttaaaatgaaaaagtttcggattaaaatttaaaatctttacacattaacat |
317 |
Q |
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| T |
6265184 |
tttaaaga-atttttttttttacattaaacgattccaccaattctccttttaaaatgaaaaagtttcggattaaaatttaaaatatttacacattaac-- |
6265280 |
T |
|
| Q |
318 |
attggagttataaacaaaatccaacaatagacacataacttttaacggggcagggctaatctctgtccctcatgtcattctttagttttgttatgatnnn |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6265281 |
attggagttataaacaaaatccaacaatagacacataacttttaacggggcagggctaatctctgtccctcatgtcattctttagttttgttatgat-aa |
6265379 |
T |
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| Q |
418 |
nnnnnnntcttctcattaattttctcaaaggaaattgctacttaccgcgaataaaatctcgcgaaagtatcacgatctcgcaagctatcccatgtatcac |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
6265380 |
aaaaaaatcttctcattaattttctcaaaggaaattgctacttaccgcgaataaaatctcgcgaaagtatcacgatctcgtaagctaccccatgtatcac |
6265479 |
T |
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| Q |
518 |
tcaaataaacaaaaacttacccatgacctatg |
549 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6265480 |
tcaaataaacaaaaacttacccatgacctatg |
6265511 |
T |
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